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Results: 9

1.

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.

Kramer K, Sachsenberg T, Beckmann BM, Qamar S, Boon KL, Hentze MW, Kohlbacher O, Urlaub H.

Nat Methods. 2014 Aug 31. doi: 10.1038/nmeth.3092. [Epub ahead of print]

PMID:
25173706
[PubMed - as supplied by publisher]
2.

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience.

Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, Steinbeck C, Neuhauser N, Cox J, Neumann S, Fan J, Reisinger F, Xu QW, Del Toro N, Perez-Riverol Y, Ghali F, Bandeira N, Xenarios I, Kohlbacher O, Vizcaino JA, Hermjakob H.

Mol Cell Proteomics. 2014 Jun 30. pii: mcp.O113.036681. [Epub ahead of print]

PMID:
24980485
[PubMed - as supplied by publisher]
Free Article
3.

On comparison of SimTandem with state-of-the-art peptide identification tools, efficiency of precursor mass filter and dealing with variable modifications.

Novák J, Sachsenberg T, Hoksza D, Skopal T, Kohlbacher O.

J Integr Bioinform. 2013 Nov 14;10(3):228. doi: 10.2390/biecoll-jib-2013-228.

PMID:
24231142
[PubMed - indexed for MEDLINE]
4.

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA, Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR.

Mol Cell Proteomics. 2013 Aug;12(8):2332-40. doi: 10.1074/mcp.O113.028506. Epub 2013 Apr 18.

PMID:
23599424
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PTMeta: increasing identification rates of modified peptides using modification prescanning and meta-analysis.

Nahnsen S, Sachsenberg T, Kohlbacher O.

Proteomics. 2013 Mar;13(6):1042-51. doi: 10.1002/pmic.201200315.

PMID:
23335442
[PubMed - indexed for MEDLINE]
6.

Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.

Laubinger S, Zeller G, Henz SR, Buechel S, Sachsenberg T, Wang JW, Rätsch G, Weigel D.

Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17466-73. doi: 10.1073/pnas.1012891107. Epub 2010 Sep 24.

PMID:
20870966
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, Rätsch G, Weigel D, Laubinger S.

Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Erratum in: Plant J. 2009 Dec;60(5):929.

PMID:
19222804
[PubMed - indexed for MEDLINE]
8.

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana.

Laubinger S, Zeller G, Henz SR, Sachsenberg T, Widmer CK, Naouar N, Vuylsteke M, Schölkopf B, Rätsch G, Weigel D.

Genome Biol. 2008;9(7):R112. doi: 10.1186/gb-2008-9-7-r112. Epub 2008 Jul 9.

PMID:
18613972
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.

Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D.

Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8795-800. doi: 10.1073/pnas.0802493105. Epub 2008 Jun 12.

PMID:
18550839
[PubMed - indexed for MEDLINE]
Free PMC Article

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