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Items: 1 to 20 of 144

1.

A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex.

Lewis Ames C, Ryan JF, Bely AE, Cartwright P, Collins AG.

BMC Genomics. 2016 Aug 17;17:650. doi: 10.1186/s12864-016-2944-3.

PMID:
27535656
Free PMC Article
2.

Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis.

Babonis LS, Martindale MQ, Ryan JF.

BMC Evol Biol. 2016 May 23;16(1):114. doi: 10.1186/s12862-016-0683-3.

3.

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML.

Genome Biol Evol. 2016 Jun 3;8(5):1571-89. doi: 10.1093/gbe/evw100.

4.

Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis.

Long KA, Nossa CW, Sewell MA, Putnam NH, Ryan JF.

Gigascience. 2016 May 10;5:20. doi: 10.1186/s13742-016-0125-6. eCollection 2016.

5.
6.

The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2016 Mar 31;531(7596):637-41. doi: 10.1038/nature16994. Epub 2016 Feb 17.

7.

Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets.

Ryan JF, Hovde R, Glanville J, Lyu SC, Ji X, Gupta S, Tibshirani RJ, Jay DC, Boyd SD, Chinthrajah RS, Davis MM, Galli SJ, Maecker HT, Nadeau KC.

Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):E1286-95. doi: 10.1073/pnas.1520180113. Epub 2016 Jan 25.

PMID:
26811452
8.

Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida.

Zwarycz AS, Nossa CW, Putnam NH, Ryan JF.

Genome Biol Evol. 2015 Dec 10;8(1):271-81. doi: 10.1093/gbe/evv243.

9.

Where is my mind? How sponges and placozoans may have lost neural cell types.

Ryan JF, Chiodin M.

Philos Trans R Soc Lond B Biol Sci. 2015 Dec 19;370(1684). pii: 20150059. doi: 10.1098/rstb.2015.0059. Review.

PMID:
26554046
10.

The evolution of animal genomes.

Dunn CW, Ryan JF.

Curr Opin Genet Dev. 2015 Dec;35:25-32. doi: 10.1016/j.gde.2015.08.006. Epub 2015 Sep 9. Review.

PMID:
26363125
11.

Automation and Evaluation of the SOWH Test with SOWHAT.

Church SH, Ryan JF, Dunn CW.

Syst Biol. 2015 Nov;64(6):1048-58. doi: 10.1093/sysbio/syv055. Epub 2015 Jul 30.

12.

Acinar cell reprogramming: a clinically important target in pancreatic disease.

Pin CL, Ryan JF, Mehmood R.

Epigenomics. 2015;7(2):267-81. doi: 10.2217/epi.14.83. Review.

PMID:
25942535
13.

Did the ctenophore nervous system evolve independently?

Ryan JF.

Zoology (Jena). 2014 Aug;117(4):225-6. doi: 10.1016/j.zool.2014.06.001. Epub 2014 Jun 11. Review.

14.

A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi.

Moreland RT, Nguyen AD, Ryan JF, Schnitzler CE, Koch BJ, Siewert K, Wolfsberg TG, Baxevanis AD.

BMC Genomics. 2014 Apr 28;15:316. doi: 10.1186/1471-2164-15-316.

15.

Wells syndrome (eosinophilic cellulitis): Proposed diagnostic criteria and a literature review of the drug-induced variant.

Heelan K, Ryan JF, Shear NH, Egan CA.

J Dermatol Case Rep. 2013 Dec 30;7(4):113-20. doi: 10.3315/jdcr.2013.1157. eCollection 2013.

16.

The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P; NISC Comparative Sequencing Program, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD.

Science. 2013 Dec 13;342(6164):1242592. doi: 10.1126/science.1242592.

17.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

18.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature. 2013 Aug 22;500(7463):453-7. doi: 10.1038/nature12326. Epub 2013 Jul 21.

PMID:
23873043
19.

Electrically conducting, ultra-sharp, high aspect-ratio probes for AFM fabricated by electron-beam-induced deposition of platinum.

Brown J, Kocher P, Ramanujan CS, Sharp DN, Torimitsu K, Ryan JF.

Ultramicroscopy. 2013 Oct;133:62-6. doi: 10.1016/j.ultramic.2013.05.005. Epub 2013 May 20.

PMID:
23770730
20.

Reconstitution of homomeric GluA2(flop) receptors in supported lipid membranes: functional and structural properties.

Baranovic J, Ramanujan CS, Kasai N, Midgett CR, Madden DR, Torimitsu K, Ryan JF.

J Biol Chem. 2013 Mar 22;288(12):8647-57. doi: 10.1074/jbc.M112.422105. Epub 2013 Feb 4.

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