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Results: 1 to 20 of 21

1.

A computational model for genetic and epigenetic signals in colon cancer.

Roznovăţ IA, Ruskin HJ.

Interdiscip Sci. 2013 Sep;5(3):175-86. doi: 10.1007/s12539-013-0172-y. Epub 2013 Dec 4.

PMID:
24307409
[PubMed - in process]
2.

RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering.

Sîrbu A, Kerr G, Crane M, Ruskin HJ.

PLoS One. 2012;7(12):e50986. doi: 10.1371/journal.pone.0050986. Epub 2012 Dec 10.

PMID:
23251411
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The landscape for epigenetic/epigenomic biomedical resources.

Shakya K, O'Connell MJ, Ruskin HJ.

Epigenetics. 2012 Sep;7(9):982-6. Epub 2012 Aug 9. Review.

PMID:
22874136
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Colon cancer associated genes exhibit signatures of positive selection at functionally significant positions.

Morgan CC, Shakya K, Webb A, Walsh TA, Lynch M, Loscher CE, Ruskin HJ, O'Connell MJ.

BMC Evol Biol. 2012 Jul 12;12:114. doi: 10.1186/1471-2148-12-114.

PMID:
22788692
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrating heterogeneous gene expression data for gene regulatory network modelling.

Sîrbu A, Ruskin HJ, Crane M.

Theory Biosci. 2012 Jun;131(2):95-102. doi: 10.1007/s12064-011-0133-0. Epub 2011 Sep 24.

PMID:
21948152
[PubMed - indexed for MEDLINE]
6.

Computational micromodel for epigenetic mechanisms.

Raghavan K, Ruskin HJ, Perrin D, Goasmat F, Burns J.

PLoS One. 2010 Nov 30;5(11):e14031. doi: 10.1371/journal.pone.0014031.

PMID:
21152421
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Cross-platform microarray data normalisation for regulatory network inference.

Sîrbu A, Ruskin HJ, Crane M.

PLoS One. 2010 Nov 12;5(11):e13822. doi: 10.1371/journal.pone.0013822.

PMID:
21103045
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Model refinement through high-performance computing: an agent-based HIV example.

Perrin D, Ruskin HJ, Crane M.

Immunome Res. 2010 Sep 27;6 Suppl 1:S3. doi: 10.1186/1745-7580-6-S1-S3.

PMID:
20875154
[PubMed]
Free PMC Article
9.

Comparison of microarray preprocessing methods.

Shakya K, Ruskin HJ, Kerr G, Crane M, Becker J.

Adv Exp Med Biol. 2010;680:139-47. doi: 10.1007/978-1-4419-5913-3_16.

PMID:
20865495
[PubMed - indexed for MEDLINE]
10.

Cell type-dependent, infection-induced, aberrant DNA methylation in gastric cancer.

Perrin D, Ruskin HJ, Niwa T.

J Theor Biol. 2010 May 21;264(2):570-7. doi: 10.1016/j.jtbi.2010.02.040. Epub 2010 Feb 26.

PMID:
20219476
[PubMed - indexed for MEDLINE]
11.

Comparison of evolutionary algorithms in gene regulatory network model inference.

Sîrbu A, Ruskin HJ, Crane M.

BMC Bioinformatics. 2010 Jan 27;11:59. doi: 10.1186/1471-2105-11-59.

PMID:
20105328
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Seizure characterisation using frequency-dependent multivariate dynamics.

Conlon T, Ruskin HJ, Crane M.

Comput Biol Med. 2009 Sep;39(9):760-7. doi: 10.1016/j.compbiomed.2009.06.003. Epub 2009 Jul 5.

PMID:
19580962
[PubMed - indexed for MEDLINE]
13.

3D Multi-agent models for protein release from PLGA spherical particles with complex inner morphologies.

Barat A, Ruskin HJ, Crane M.

Theory Biosci. 2008 Jun;127(2):95-105. doi: 10.1007/s12064-008-0041-0. Epub 2008 Apr 26.

PMID:
18438693
[PubMed - indexed for MEDLINE]
14.

Quantitative multi-agent models for simulating protein release from PLGA bioerodible nano- and microspheres.

Barat A, Crane M, Ruskin HJ.

J Pharm Biomed Anal. 2008 Sep 29;48(2):361-8. doi: 10.1016/j.jpba.2008.02.031. Epub 2008 Mar 8.

PMID:
18436414
[PubMed - indexed for MEDLINE]
15.

Diversity emergence and dynamics during primary immune response: a shape space, physical space model.

Burns J, Ruskin HJ.

Theory Biosci. 2004 Sep;123(2):181-93. doi: 10.1016/j.thbio.2004.05.001.

PMID:
18236098
[PubMed]
16.

Techniques for clustering gene expression data.

Kerr G, Ruskin HJ, Crane M, Doolan P.

Comput Biol Med. 2008 Mar;38(3):283-93. Epub 2007 Dec 3. Review.

PMID:
18061589
[PubMed - indexed for MEDLINE]
17.

Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection.

Hecquet D, Ruskin HJ, Crane M.

Comput Biol Med. 2007 May;37(5):691-9. Epub 2006 Aug 8.

PMID:
16901479
[PubMed - indexed for MEDLINE]
18.

Survival with AIDS in Ireland.

Dunne MT, Ruskin HJ, Mulcahy FM.

AIDS. 1997 Aug;11(10):1281-90.

PMID:
9256947
[PubMed - indexed for MEDLINE]
19.

AIDS in Ireland: the reporting delay distribution and the implementation of integral equation models.

Comiskey CM, Ruskin HJ.

Comput Appl Biosci. 1992 Dec;8(6):579-81.

PMID:
1468015
[PubMed - indexed for MEDLINE]
20.

Directed alternating lattices and the site-to-bond ratio for animals and trees.

Ruskin HJ, Cadilhe AM, Carvalho JA.

Phys Rev A. 1992 Aug 15;46(4):1797-1804. No abstract available.

PMID:
9908314
[PubMed - as supplied by publisher]

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