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Results: 7

1.

NetworkTrail--a web service for identifying and visualizing deregulated subnetworks.

Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof HP.

Bioinformatics. 2013 Jul 1;29(13):1702-3. doi: 10.1093/bioinformatics/btt204. Epub 2013 Apr 26.

PMID:
23625999
[PubMed - indexed for MEDLINE]
Free Article
2.

An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

Backes C, Rurainski A, Klau GW, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M, Keller A, Burtscher H, Kaufmann M, Meese E, Lenhof HP.

Nucleic Acids Res. 2012 Mar;40(6):e43. doi: 10.1093/nar/gkr1227. Epub 2011 Dec 30.

PMID:
22210863
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Automated bond order assignment as an optimization problem.

Dehof AK, Rurainski A, Bui QB, Böcker S, Lenhof HP, Hildebrandt A.

Bioinformatics. 2011 Mar 1;27(5):619-25. doi: 10.1093/bioinformatics/btq718. Epub 2011 Jan 17.

PMID:
21245051
[PubMed - indexed for MEDLINE]
Free Article
4.

BALL--biochemical algorithms library 1.3.

Hildebrandt A, Dehof AK, Rurainski A, Bertsch A, Schumann M, Toussaint NC, Moll A, Stöckel D, Nickels S, Mueller SC, Lenhof HP, Kohlbacher O.

BMC Bioinformatics. 2010 Oct 25;11:531. doi: 10.1186/1471-2105-11-531.

PMID:
20973958
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A new Lamarckian genetic algorithm for flexible ligand-receptor docking.

Fuhrmann J, Rurainski A, Lenhof HP, Neumann D.

J Comput Chem. 2010 Jul 15;31(9):1911-8. doi: 10.1002/jcc.21478.

PMID:
20082382
[PubMed - indexed for MEDLINE]
6.

A consensus line search algorithm for molecular potential energy functions.

Rurainski A, Hildebrandt A, Lenhof HP.

J Comput Chem. 2009 Jul 15;30(9):1499-509. doi: 10.1002/jcc.21175.

PMID:
19086059
[PubMed - indexed for MEDLINE]
7.

A new method for the gradient-based optimization of molecular complexes.

Fuhrmann J, Rurainski A, Lenhof HP, Neumann D.

J Comput Chem. 2009 Jul 15;30(9):1371-8. doi: 10.1002/jcc.21159.

PMID:
19031415
[PubMed - indexed for MEDLINE]

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