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Results: 1 to 20 of 42

1.

Early predictive biomarkers for postpartum depression point to a role for estrogen receptor signaling.

Mehta D, Newport DJ, Frishman G, Kraus L, Rex-Haffner M, Ritchie JC, Lori A, Knight BT, Stagnaro E, Ruepp A, Stowe ZN, Binder EB.

Psychol Med. 2014 Feb 5:1-14. [Epub ahead of print]

PMID:
24495551
[PubMed - as supplied by publisher]
2.

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.

Blohm P, Frishman G, Smialowski P, Goebels F, Wachinger B, Ruepp A, Frishman D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D396-400. doi: 10.1093/nar/gkt1079. Epub 2013 Nov 8.

PMID:
24214996
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

HoPaCI-DB: host-Pseudomonas and Coxiella interaction database.

Bleves S, Dunger I, Walter MC, Frangoulidis D, Kastenmüller G, Voulhoux R, Ruepp A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D671-6. doi: 10.1093/nar/gkt925. Epub 2013 Oct 16.

PMID:
24137008
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

HSC-explorer: a curated database for hematopoietic stem cells.

Montrone C, Kokkaliaris KD, Loeffler D, Lechner M, Kastenmüller G, Schroeder T, Ruepp A.

PLoS One. 2013 Jul 30;8(7):e70348. doi: 10.1371/journal.pone.0070348. Print 2013.

PMID:
23936191
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

CIDeR: multifactorial interaction networks in human diseases.

Lechner M, Höhn V, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Kastenmüller G, Waegele B, Ruepp A.

Genome Biol. 2012 Jul 18;13(7):R62. [Epub ahead of print]

PMID:
22809392
[PubMed - as supplied by publisher]
Free PMC Article
6.

PhenomiR: microRNAs in human diseases and biological processes.

Ruepp A, Kowarsch A, Theis F.

Methods Mol Biol. 2012;822:249-60. doi: 10.1007/978-1-61779-427-8_17.

PMID:
22144204
[PubMed - indexed for MEDLINE]
7.

MicroRNAs coordinately regulate protein complexes.

Sass S, Dietmann S, Burk UC, Brabletz S, Lutter D, Kowarsch A, Mayer KF, Brabletz T, Ruepp A, Theis FJ, Wang Y.

BMC Syst Biol. 2011 Aug 25;5:136. doi: 10.1186/1752-0509-5-136.

PMID:
21867514
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

MIPS: curated databases and comprehensive secondary data resources in 2010.

Mewes HW, Ruepp A, Theis F, Rattei T, Walter M, Frishman D, Suhre K, Spannagl M, Mayer KF, Stümpflen V, Antonov A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D220-4. doi: 10.1093/nar/gkq1157. Epub 2010 Nov 24.

PMID:
21109531
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways.

Kowarsch A, Marr C, Schmidl D, Ruepp A, Theis FJ.

PLoS One. 2010 Jun 30;5(6):e11154. doi: 10.1371/journal.pone.0011154.

PMID:
20614023
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ.

Genome Biol. 2010 Jan 20;11(1):R6. doi: 10.1186/gb-2010-11-1-r6.

PMID:
20089154
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Negatome database: a reference set of non-interacting protein pairs.

Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Rattei T, Frishman D, Ruepp A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D540-4. doi: 10.1093/nar/gkp1026. Epub 2009 Nov 17.

PMID:
19920129
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

CORUM: the comprehensive resource of mammalian protein complexes--2009.

Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D497-501. doi: 10.1093/nar/gkp914. Epub 2009 Nov 1.

PMID:
19884131
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An evolutionary and structural characterization of mammalian protein complex organization.

Wong P, Althammer S, Hildebrand A, Kirschner A, Pagel P, Geissler B, Smialowski P, Blöchl F, Oesterheld M, Schmidt T, Strack N, Theis FJ, Ruepp A, Frishman D.

BMC Genomics. 2008 Dec 23;9:629. doi: 10.1186/1471-2164-9-629.

PMID:
19108706
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CRONOS: the cross-reference navigation server.

Waegele B, Dunger-Kaltenbach I, Fobo G, Montrone C, Mewes HW, Ruepp A.

Bioinformatics. 2009 Jan 1;25(1):141-3. doi: 10.1093/bioinformatics/btn590. Epub 2008 Nov 13.

PMID:
19010804
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Rapid access to genes of biotechnologically useful enzymes by partial genome sequencing: the thermoalkaliphile Anaerobranca gottschalkii.

Antranikian G, Ruepp A, Gordon PM, Ballschmiter M, Zibat A, Stark M, Sensen CW, Frishman D, Liebl W, Klenk HP.

J Mol Microbiol Biotechnol. 2009;16(1-2):81-90. doi: 10.1159/000142896. Epub 2008 Oct 29.

PMID:
18957864
[PubMed - indexed for MEDLINE]
16.

OREST: the online resource for EST analysis.

Waegele B, Schmidt T, Mewes HW, Ruepp A.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W140-4. doi: 10.1093/nar/gkn253. Epub 2008 May 7.

PMID:
18463135
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1.

Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, Rodewald K, Ruepp A, Soppa J, Tittor J, Oesterhelt D.

Genomics. 2008 Apr;91(4):335-46. doi: 10.1016/j.ygeno.2008.01.001. Epub 2008 Mar 3.

PMID:
18313895
[PubMed - indexed for MEDLINE]
Free Article
18.

Cellulose as an extracellular matrix component present in Enterobacter sakazakii biofilms.

Grimm M, Stephan R, Iversen C, Manzardo GG, Rattei T, Riedel K, Ruepp A, Frishman D, Lehner A.

J Food Prot. 2008 Jan;71(1):13-8.

PMID:
18236657
[PubMed - indexed for MEDLINE]
19.

MIPS: analysis and annotation of genome information in 2007.

Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. Epub 2007 Dec 23.

PMID:
18158298
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

CORUM: the comprehensive resource of mammalian protein complexes.

Ruepp A, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Stransky M, Waegele B, Schmidt T, Doudieu ON, Stümpflen V, Mewes HW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D646-50. Epub 2007 Oct 26.

PMID:
17965090
[PubMed - indexed for MEDLINE]
Free PMC Article

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