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Results: 1 to 20 of 78

1.

Mixing with herringbone-inspired microstructures: overcoming the diffusion limit in co-laminar microfluidic devices.

Marschewski J, Jung S, Ruch P, Prasad N, Mazzotti S, Michel B, Poulikakos D.

Lab Chip. 2015 Mar 31;15(8):1923-33. doi: 10.1039/c5lc00045a.

PMID:
25737365
2.

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification.

Gobeill J, Pasche E, Vishnyakova D, Ruch P.

Database (Oxford). 2014 Sep 4;2014. pii: bau088. doi: 10.1093/database/bau088. Print 2014.

3.

Electronic processing of informed consents in a global pharmaceutical company environment.

Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P.

Stud Health Technol Inform. 2014;205:995-9.

PMID:
25160337
4.

Overview of the gene ontology task at BioCreative IV.

Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z.

Database (Oxford). 2014 Aug 25;2014. pii: bau086. doi: 10.1093/database/bau086. Print 2014.

5.

Development and tuning of an original search engine for patent libraries in medicinal chemistry.

Pasche E, Gobeill J, Kreim O, Oezdemir-Zaech F, Vachon T, Lovis C, Ruch P.

BMC Bioinformatics. 2014;15 Suppl 1:S15. doi: 10.1186/1471-2105-15-S1-S15. Epub 2014 Jan 10.

6.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

7.

Use of controlled vocabularies to improve biomedical information retrieval tasks.

Pasche E, Gobeill J, Vishnyakova D, Ruch P, Lovis C.

Stud Health Technol Inform. 2013;192:1068.

PMID:
23920842
8.

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.

Gobeill J, Pasche E, Vishnyakova D, Ruch P.

Database (Oxford). 2013 Jul 9;2013:bat041. doi: 10.1093/database/bat041. Print 2013.

9.

Improving data and knowledge management to better integrate health care and research.

Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigó R, Klein TE, López-Bigas N, Maojo V, Mons B, Musen M, Oliveira JL, Rowe A, Ruch P, Shabo A, Shortliffe EH, Valencia A, van der Lei J, Mayer MA, Sanz F.

J Intern Med. 2013 Oct;274(4):321-8. doi: 10.1111/joim.12105. Epub 2013 Jul 15. No abstract available.

10.

Assisted knowledge discovery for the maintenance of clinical guidelines.

Pasche E, Ruch P, Teodoro D, Huttner A, Harbarth S, Gobeill J, Wipfli R, Lovis C.

PLoS One. 2013 Apr 30;8(4):e62874. doi: 10.1371/journal.pone.0062874. Print 2013. Erratum in: PLoS One. 2013;8(5). doi:10.1371/annotation/b38c6896-f340-45cb-a9ca-ceff49330c3f.

11.

Utilization of ontology look-up services in information retrieval for biomedical literature.

Vishnyakova D, Pasche E, Lovis C, Ruch P.

Stud Health Technol Inform. 2013;186:155-9.

PMID:
23542988
12.

Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

Veuthey AL, Bridge A, Gobeill J, Ruch P, McEntyre JR, Bougueleret L, Xenarios I.

BMC Bioinformatics. 2013 Mar 22;14:104. doi: 10.1186/1471-2105-14-104.

13.

Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.

Vishnyakova D, Pasche E, Ruch P.

Database (Oxford). 2012 Dec 5;2012:bas050. doi: 10.1093/database/bas050. Print 2012.

15.

Classification and prioritization of biomedical literature for the comparative toxicogenomics database.

Vishnyakova D, Pasche E, Gobeill J, Gaudinat A, Lovis C, Ruch P.

Stud Health Technol Inform. 2012;180:210-4.

PMID:
22874182
16.

An advanced search engine for patent analytics in medicinal chemistry.

Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnykova D, Lovis C, Ruch P.

Stud Health Technol Inform. 2012;180:204-9.

PMID:
22874181
17.

Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation.

Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P, Lovis C.

J Med Internet Res. 2012 May 29;14(3):e73. doi: 10.2196/jmir.2043.

18.

A user-friendly tool for medical-related patent retrieval.

Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnyakova D, Lovis C, Ruch P.

Stud Health Technol Inform. 2012;174:121-5.

PMID:
22491124
19.

Pathogens and gene product normalization in the biomedical literature.

Vishnyakova D, Pasche E, Teodoro D, Lovis C, Ruch P.

Stud Health Technol Inform. 2012;174:89-93.

PMID:
22491118
20.

The gene normalization task in BioCreative III.

Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, Cho HC, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S2. doi: 10.1186/1471-2105-12-S8-S2.

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