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Results: 1 to 20 of 103

1.

Quantitative 3-D analysis of GFAP labeled astrocytes from fluorescence confocal images.

Kulkarni PM, Barton E, Savelonas M, Padmanabhan R, Lu Y, Trett K, Shain W, Leasure JL, Roysam B.

J Neurosci Methods. 2015 May 15;246:38-51. doi: 10.1016/j.jneumeth.2015.02.014. Epub 2015 Mar 5.

PMID:
25745860
2.

Individual Motile CD4+ T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells.

Liadi I, Singh H, Romain G, Rey-Villamizar N, Merouane A, Adolacion JR, Kebriaei P, Huls H, Qiu P, Roysam B, Cooper LJ, Varadarajan N.

Cancer Immunol Res. 2015 Feb 24. [Epub ahead of print]

PMID:
25711538
3.

Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors.

Megjhani M, Rey-Villamizar N, Merouane A, Lu Y, Mukherjee A, Trett K, Chong P, Harris C, Shain W, Roysam B.

Bioinformatics. 2015 Feb 19. pii: btv109. [Epub ahead of print]

PMID:
25701570
4.

Algorithms for improved 3-D reconstruction of live mammalian embryo vasculature from optical coherence tomography data.

Kulkarni PM, Rey-Villamizar N, Merouane A, Sudheendran N, Wang S, Garcia M, Larina IV, Roysam B, Larin KV.

Quant Imaging Med Surg. 2015 Feb;5(1):125-35. doi: 10.3978/j.issn.2223-4292.2014.11.33.

5.

Antibody Fc engineering improves frequency and promotes kinetic boosting of serial killing mediated by NK cells.

Romain G, Senyukov V, Rey-Villamizar N, Merouane A, Kelton W, Liadi I, Mahendra A, Charab W, Georgiou G, Roysam B, Lee DA, Varadarajan N.

Blood. 2014 Nov 20;124(22):3241-9. doi: 10.1182/blood-2014-04-569061. Epub 2014 Sep 16.

PMID:
25232058
6.

Quantitative arbor analytics: unsupervised harmonic co-clustering of populations of brain cell arbors based on L-measure.

Lu Y, Carin L, Coifman R, Shain W, Roysam B.

Neuroinformatics. 2015 Jan;13(1):47-63. doi: 10.1007/s12021-014-9237-2.

PMID:
25086878
7.

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python.

Rey-Villamizar N, Somasundar V, Megjhani M, Xu Y, Lu Y, Padmanabhan R, Trett K, Shain W, Roysam B.

Front Neuroinform. 2014 Apr 29;8:39. doi: 10.3389/fninf.2014.00039. eCollection 2014.

8.

An active learning approach for rapid characterization of endothelial cells in human tumors.

Padmanabhan RK, Somasundar VH, Griffith SD, Zhu J, Samoyedny D, Tan KS, Hu J, Liao X, Carin L, Yoon SS, Flaherty KT, Dipaola RS, Heitjan DF, Lal P, Feldman MD, Roysam B, Lee WM.

PLoS One. 2014 Mar 6;9(3):e90495. doi: 10.1371/journal.pone.0090495. eCollection 2014.

9.

Automated image computing reshapes computational neuroscience.

Peng H, Roysam B, Ascoli GA.

BMC Bioinformatics. 2013 Oct 4;14:293. doi: 10.1186/1471-2105-14-293.

10.

Preexisting epithelial diversity in normal human livers: a tissue-tethered cytometric analysis in portal/periportal epithelial cells.

Isse K, Lesniak A, Grama K, Maier J, Specht S, Castillo-Rama M, Lunz J, Roysam B, Michalopoulos G, Demetris AJ.

Hepatology. 2013 Apr;57(4):1632-43. doi: 10.1002/hep.26131. Epub 2013 Mar 19.

11.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

12.

NetMets: software for quantifying and visualizing errors in biological network segmentation.

Mayerich D, Bjornsson C, Taylor J, Roysam B.

BMC Bioinformatics. 2012;13 Suppl 8:S7. doi: 10.1186/1471-2105-13-S8-S7. Epub 2012 May 18.

13.

Serial section registration of axonal confocal microscopy datasets for long-range neural circuit reconstruction.

Hogrebe L, Paiva AR, Jurrus E, Christensen C, Bridge M, Dai L, Pfeiffer RL, Hof PR, Roysam B, Korenberg JR, Tasdizen T.

J Neurosci Methods. 2012 Jun 15;207(2):200-10. doi: 10.1016/j.jneumeth.2012.03.002. Epub 2012 Mar 28.

PMID:
22465678
14.

Axonal transport analysis using Multitemporal Association Tracking.

Winter MR, Fang C, Banker G, Roysam B, Cohen AR.

Int J Comput Biol Drug Des. 2012;5(1):35-48. doi: 10.1504/IJCBDD.2012.045950. Epub 2012 Mar 21.

15.

Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing.

Winter M, Wait E, Roysam B, Goderie SK, Ali RA, Kokovay E, Temple S, Cohen AR.

Nat Protoc. 2011 Nov 17;6(12):1942-52. doi: 10.1038/nprot.2011.422.

16.

Digital transplantation pathology: combining whole slide imaging, multiplex staining and automated image analysis.

Isse K, Lesniak A, Grama K, Roysam B, Minervini MI, Demetris AJ.

Am J Transplant. 2012 Jan;12(1):27-37. doi: 10.1111/j.1600-6143.2011.03797.x. Epub 2011 Nov 4. Review.

17.

Cell-based quantification of molecular biomarkers in histopathology specimens.

Al-Kofahi Y, Lassoued W, Grama K, Nath SK, Zhu J, Oueslati R, Feldman M, Lee WM, Roysam B.

Histopathology. 2011 Jul;59(1):40-54. doi: 10.1111/j.1365-2559.2011.03878.x.

18.

3-D image pre-processing algorithms for improved automated tracing of neuronal arbors.

Narayanaswamy A, Wang Y, Roysam B.

Neuroinformatics. 2011 Sep;9(2-3):219-31. doi: 10.1007/s12021-011-9116-z.

PMID:
21537877
19.

The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions.

Luisi J, Narayanaswamy A, Galbreath Z, Roysam B.

Neuroinformatics. 2011 Sep;9(2-3):305-15. doi: 10.1007/s12021-011-9115-0. No abstract available.

PMID:
21487683
20.

Characterization of a MAPK scaffolding protein logic gate in gonadotropes.

Choi SG, Ruf-Zamojski F, Pincas H, Roysam B, Sealfon SC.

Mol Endocrinol. 2011 Jun;25(6):1027-39. doi: 10.1210/me.2010-0387. Epub 2011 Mar 24.

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