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Results: 1 to 20 of 67

1.

Origin of Spliceosomal Introns and Alternative Splicing.

Irimia M, Roy SW.

Cold Spring Harb Perspect Biol. 2014 Jun 2;6(6). pii: a016071. doi: 10.1101/cshperspect.a016071. Review.

PMID:
24890509
[PubMed - as supplied by publisher]
2.

Diversity and evolution of spliceosomal systems.

Roy SW, Irimia M.

Methods Mol Biol. 2014;1126:13-33. doi: 10.1007/978-1-62703-980-2_2.

PMID:
24549653
[PubMed - in process]
3.

Elephant shark genome provides unique insights into gnathostome evolution.

Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay BH, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC.

Nature. 2014 Jan 9;505(7482):174-9. doi: 10.1038/nature12826.

PMID:
24402279
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Ancient cis-regulatory constraints and the evolution of genome architecture.

Irimia M, Maeso I, Roy SW, Fraser HB.

Trends Genet. 2013 Sep;29(9):521-8. doi: 10.1016/j.tig.2013.05.008. Epub 2013 Jun 18. Review.

PMID:
23791467
[PubMed - indexed for MEDLINE]
5.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
[PubMed - indexed for MEDLINE]
6.

Genome evolution: where do new introns come from?

Roy SW, Irimia M.

Curr Biol. 2012 Jul 10;22(13):R529-31. doi: 10.1016/j.cub.2012.05.017.

PMID:
22790002
[PubMed - indexed for MEDLINE]
Free Article
7.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

PMID:
22722344
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans.

Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, Bachtrog D.

BMC Genomics. 2012 Mar 22;13:109. doi: 10.1186/1471-2164-13-109.

PMID:
22439699
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Widespread recurrent evolution of genomic features.

Maeso I, Roy SW, Irimia M.

Genome Biol Evol. 2012;4(4):486-500. doi: 10.1093/gbe/evs022. Epub 2012 Mar 13. Review.

PMID:
22417916
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evolutionarily conserved A-to-I editing increases protein stability of the alternative splicing factor Nova1.

Irimia M, Denuc A, Ferran JL, Pernaute B, Puelles L, Roy SW, Garcia-Fernàndez J, Marfany G.

RNA Biol. 2012 Jan;9(1):12-21. doi: 10.4161/rna.9.1.18387. Epub 2012 Jan 1.

PMID:
22258141
[PubMed - indexed for MEDLINE]
Free Article
11.

Contrasting 5' and 3' evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures.

Irimia M, Maeso I, Burguera D, Hidalgo-Sánchez M, Puelles L, Roy SW, Garcia-Fernàndez J, Ferran JL.

Genome Biol Evol. 2011;3:551-64. doi: 10.1093/gbe/evr056. Epub 2011 Jun 16.

PMID:
21680890
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Numerous fragmented spliceosomal introns, AT-AC splicing, and an unusual dynein gene expression pathway in Giardia lamblia.

Roy SW, Hudson AJ, Joseph J, Yee J, Russell AG.

Mol Biol Evol. 2012 Jan;29(1):43-9. doi: 10.1093/molbev/msr063. Epub 2011 Apr 11.

PMID:
21482665
[PubMed - indexed for MEDLINE]
Free Article
13.

Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain.

Irimia M, Denuc A, Burguera D, Somorjai I, Martín-Durán JM, Genikhovich G, Jimenez-Delgado S, Technau U, Roy SW, Marfany G, Garcia-Fernàndez J.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5319-24. doi: 10.1073/pnas.1012333108. Epub 2011 Mar 9.

PMID:
21389270
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.

Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, Cross I, Yadetie F, Muffato M, Louis A, Butcher S, Tsagkogeorga G, Konrad A, Singh S, Jensen MF, Cong EH, Eikeseth-Otteraa H, Noel B, Anthouard V, Porcel BM, Kachouri-Lafond R, Nishino A, Ugolini M, Chourrout P, Nishida H, Aasland R, Huzurbazar S, Westhof E, Delsuc F, Lehrach H, Reinhardt R, Weissenbach J, Roy SW, Artiguenave F, Postlethwait JH, Manak JR, Thompson EM, Jaillon O, Du Pasquier L, Boudinot P, Liberles DA, Volff JN, Philippe H, Lenhard B, Roest Crollius H, Wincker P, Chourrout D.

Science. 2010 Dec 3;330(6009):1381-5. doi: 10.1126/science.1194167. Epub 2010 Nov 18.

PMID:
21097902
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Molecular characterization of Myostatin gene from Zhikong scallop Chlamys farreri (Jones et Preston 1904).

Hu X, Guo H, He Y, Wang S, Zhang L, Wang S, Huang X, Roy SW, Lu W, Hu J, Bao Z.

Genes Genet Syst. 2010;85(3):207-18.

PMID:
21041979
[PubMed - indexed for MEDLINE]
Free Article
16.

Constrained intron structures in a microsporidian.

Lee RC, Gill EE, Roy SW, Fast NM.

Mol Biol Evol. 2010 Sep;27(9):1979-82. doi: 10.1093/molbev/msq087. Epub 2010 Apr 1.

PMID:
20360213
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Internal and external paralogy in the evolution of tropomyosin genes in metazoans.

Irimia M, Maeso I, Gunning PW, Garcia-Fernàndez J, Roy SW.

Mol Biol Evol. 2010 Jul;27(7):1504-17. doi: 10.1093/molbev/msq018. Epub 2010 Feb 10.

PMID:
20147436
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Complex selection on 5' splice sites in intron-rich organisms.

Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV.

Genome Res. 2009 Nov;19(11):2021-7. doi: 10.1101/gr.089276.108. Epub 2009 Sep 10.

PMID:
19745111
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Intronization, de-intronization and intron sliding are rare in Cryptococcus.

Roy SW.

BMC Evol Biol. 2009 Aug 7;9:192. doi: 10.1186/1471-2148-9-192.

PMID:
19664208
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Splicing in the eukaryotic ancestor: form, function and dysfunction.

Roy SW, Irimia M.

Trends Ecol Evol. 2009 Aug;24(8):447-55. doi: 10.1016/j.tree.2009.04.005. Epub 2009 Jul 1.

PMID:
19576657
[PubMed - indexed for MEDLINE]

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