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Results: 1 to 20 of 109

1.

The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.

Solans L, Gonzalo-Asensio J, Sala C, Benjak A, Uplekar S, Rougemont J, Guilhot C, Malaga W, Martín C, Cole ST.

PLoS Pathog. 2014 May 29;10(5):e1004183. doi: 10.1371/journal.ppat.1004183. eCollection 2014 May.

PMID:
24874799
[PubMed - in process]
Free PMC Article
2.

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Stockinger H, Altenhoff AM, Arnold K, Bairoch A, Bastian F, Bergmann S, Bougueleret L, Bucher P, Delorenzi M, Lane L, Mercier PL, Lisacek F, Michielin O, Palagi PM, Rougemont J, Schwede T, Mering Cv, Nimwegen Ev, Walther D, Xenarios I, Zavolan M, Zdobnov EM, Zoete V, Appel RD.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W436-41. doi: 10.1093/nar/gku380. Epub 2014 May 3.

PMID:
24792157
[PubMed - in process]
Free Article
3.

Genome-wide re-sequencing of multidrug-resistant Mycobacterium leprae Airaku-3.

Singh P, Benjak A, Carat S, Kai M, Busso P, Avanzi C, Paniz-Mondolfi A, Peter C, Harshman K, Rougemont J, Matsuoka M, Cole ST.

Clin Microbiol Infect. 2014 Feb 25. doi: 10.1111/1469-0691.12609. [Epub ahead of print]

PMID:
24612452
[PubMed - as supplied by publisher]
4.

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

David FP, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M.

PLoS One. 2014 Jan 27;9(1):e85879. doi: 10.1371/journal.pone.0085879. eCollection 2014.

PMID:
24475057
[PubMed - in process]
Free PMC Article
5.

Structural variation-associated expression changes are paralleled by chromatin architecture modifications.

Gheldof N, Witwicki RM, Migliavacca E, Leleu M, Didelot G, Harewood L, Rougemont J, Reymond A.

PLoS One. 2013 Nov 12;8(11):e79973. doi: 10.1371/journal.pone.0079973. eCollection 2013.

PMID:
24265791
[PubMed - in process]
Free PMC Article
6.

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data.

Weissbrodt DG, Shani N, Sinclair L, Lefebvre G, Rossi P, Maillard J, Rougemont J, Holliger C.

BMC Microbiol. 2012 Dec 27;12:306. doi: 10.1186/1471-2180-12-306.

PMID:
23270314
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Uplekar S, Rougemont J, Cole ST, Sala C.

Nucleic Acids Res. 2013 Jan;41(2):961-77. doi: 10.1093/nar/gks1260. Epub 2012 Dec 7.

PMID:
23222129
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, Hernandez N, Naef F; CycliX Consortium.

PLoS Biol. 2012;10(11):e1001442. doi: 10.1371/journal.pbio.1001442. Epub 2012 Nov 27.

PMID:
23209382
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.

Hornitschek P, Kohnen MV, Lorrain S, Rougemont J, Ljung K, López-Vidriero I, Franco-Zorrilla JM, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C.

Plant J. 2012 Sep;71(5):699-711. doi: 10.1111/j.1365-313X.2012.05033.x. Epub 2012 Jun 22.

PMID:
22536829
[PubMed - indexed for MEDLINE]
10.

Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein.

Blasco B, Chen JM, Hartkoorn R, Sala C, Uplekar S, Rougemont J, Pojer F, Cole ST.

PLoS Pathog. 2012;8(3):e1002621. doi: 10.1371/journal.ppat.1002621. Epub 2012 Mar 29.

PMID:
22479184
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide definition of the SigF regulon in Mycobacterium tuberculosis.

Hartkoorn RC, Sala C, Uplekar S, Busso P, Rougemont J, Cole ST.

J Bacteriol. 2012 Apr;194(8):2001-9. doi: 10.1128/JB.06692-11. Epub 2012 Feb 3.

PMID:
22307756
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The dynamic architecture of Hox gene clusters.

Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W, Duboule D.

Science. 2011 Oct 14;334(6053):222-5. doi: 10.1126/science.1207194.

PMID:
21998387
[PubMed - indexed for MEDLINE]
Free Article
13.

Computational analysis of protein-DNA interactions from ChIP-seq data.

Rougemont J, Naef F.

Methods Mol Biol. 2012;786:263-73. doi: 10.1007/978-1-61779-292-2_16.

PMID:
21938632
[PubMed - indexed for MEDLINE]
14.

Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.

Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A.

Methods Mol Biol. 2012;786:211-25. doi: 10.1007/978-1-61779-292-2_13.

PMID:
21938629
[PubMed - indexed for MEDLINE]
15.

GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR.

Gubelmann C, Gattiker A, Massouras A, Hens K, David F, Decouttere F, Rougemont J, Deplancke B.

Database (Oxford). 2011 Sep 14;2011:bar040. doi: 10.1093/database/bar040. Print 2011.

PMID:
21917859
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Perinatal exposure to bisphenol a increases adult mammary gland progesterone response and cell number.

Ayyanan A, Laribi O, Schuepbach-Mallepell S, Schrick C, Gutierrez M, Tanos T, Lefebvre G, Rougemont J, Yalcin-Ozuysal O, Brisken C.

Mol Endocrinol. 2011 Nov;25(11):1915-23. doi: 10.1210/me.2011-1129. Epub 2011 Sep 8.

PMID:
21903720
[PubMed - indexed for MEDLINE]
17.

Comparative genomics of Esx genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation.

Uplekar S, Heym B, Friocourt V, Rougemont J, Cole ST.

Infect Immun. 2011 Oct;79(10):4042-9. doi: 10.1128/IAI.05344-11. Epub 2011 Aug 1.

PMID:
21807910
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing.

Meylan S, Groner AC, Ambrosini G, Malani N, Quenneville S, Zangger N, Kapopoulou A, Kauzlaric A, Rougemont J, Ciuffi A, Bushman FD, Bucher P, Trono D.

BMC Genomics. 2011 Jul 26;12:378. doi: 10.1186/1471-2164-12-378.

PMID:
21791101
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L.

Huber A, French SL, Tekotte H, Yerlikaya S, Stahl M, Perepelkina MP, Tyers M, Rougemont J, Beyer AL, Loewith R.

EMBO J. 2011 Jul 5;30(15):3052-64. doi: 10.1038/emboj.2011.221.

PMID:
21730963
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Probable zoonotic leprosy in the southern United States.

Truman RW, Singh P, Sharma R, Busso P, Rougemont J, Paniz-Mondolfi A, Kapopoulou A, Brisse S, Scollard DM, Gillis TP, Cole ST.

N Engl J Med. 2011 Apr 28;364(17):1626-33. doi: 10.1056/NEJMoa1010536.

PMID:
21524213
[PubMed - indexed for MEDLINE]
Free PMC Article

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