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Results: 1 to 20 of 27

1.

categoryCompare, an analytical tool based on feature annotations.

Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LD, Petruska JC, Rouchka EC.

Front Genet. 2014 Apr 29;5:98. doi: 10.3389/fgene.2014.00098. eCollection 2014.

2.

IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons.

Harrison BJ, Flight RM, Gomes C, Venkat G, Ellis SR, Sankar U, Twiss JL, Rouchka EC, Petruska JC.

J Comp Neurol. 2014 Feb 1;522(2):308-36. doi: 10.1002/cne.23398.

PMID:
23817991
[PubMed - in process]
3.

The Transcriptional Response of Neurotrophins and Their Tyrosine Kinase Receptors in Lumbar Sensorimotor Circuits to Spinal Cord Contusion is Affected by Injury Severity and Survival Time.

Hougland MT, Harrison BJ, Magnuson DS, Rouchka EC, Petruska JC.

Front Physiol. 2013 Jan 9;3:478. doi: 10.3389/fphys.2012.00478. eCollection 2012.

PMID:
23316162
[PubMed]
Free PMC Article
4.

Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.

Rouchka EC, Flight RM.

BMC Bioinformatics. 2013 Mar 22;14 Suppl 17:A1. No abstract available.

PMID:
24625056
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Mohammad F, Flight RM, Harrison BJ, Petruska JC, Rouchka EC.

BMC Bioinformatics. 2012 Sep 12;13:229. doi: 10.1186/1471-2105-13-229.

PMID:
22967011
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Prenatal arsenic exposure alters gene expression in the adult liver to a proinflammatory state contributing to accelerated atherosclerosis.

States JC, Singh AV, Knudsen TB, Rouchka EC, Ngalame NO, Arteel GE, Piao Y, Ko MS.

PLoS One. 2012;7(6):e38713. doi: 10.1371/journal.pone.0038713. Epub 2012 Jun 15.

PMID:
22719926
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Codon usage bias as a function of generation time and life expectancy.

Mahdi RN, Rouchka EC.

Bioinformation. 2012;8(3):158-62. Epub 2012 Feb 3.

PMID:
22368389
[PubMed]
Free PMC Article
8.

Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011.

Rouchka EC, Flight RM, Homayouni R.

BMC Bioinformatics. 2011 Aug 5;12 Suppl 7:A1. Epub 2011 Aug 5. No abstract available.

PMID:
21999392
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reduced HyperBF networks: regularization by explicit complexity reduction and scaled Rprop-based training.

Mahdi RN, Rouchka EC.

IEEE Trans Neural Netw. 2011 May;22(5):673-86. doi: 10.1109/TNN.2011.2109736. Epub 2011 Mar 17.

PMID:
21421438
[PubMed - indexed for MEDLINE]
10.

Database of exact tandem repeats in the Zebrafish genome.

Rouchka EC.

BMC Genomics. 2010 Jun 1;11:347. doi: 10.1186/1471-2164-11-347.

PMID:
20515480
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

DNA-based random number generation in security circuitry.

Gearheart CM, Arazi B, Rouchka EC.

Biosystems. 2010 Jun;100(3):208-14. doi: 10.1016/j.biosystems.2010.03.005. Epub 2010 Mar 18.

PMID:
20303385
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RBF-TSS: identification of transcription start site in human using radial basis functions network and oligonucleotide positional frequencies.

Mahdi RN, Rouchka EC.

PLoS One. 2009;4(3):e4878. doi: 10.1371/journal.pone.0004878. Epub 2009 Mar 16.

PMID:
19287502
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evidence of bias towards buffered codons in human transcripts.

Mahdi RN, Rouchka EC.

Proc IEEE Int Symp Signal Proc Inf Tech. 2008 Dec 16;2008:29-34.

PMID:
20622995
[PubMed]
Free PMC Article
14.

Effect of single nucleotide polymorphisms on Affymetrix match-mismatch probe pairs.

Rouchka EC, Phatak AW, Singh AV.

Bioinformation. 2008 Jul 14;2(9):405-11.

PMID:
18795114
[PubMed]
Free PMC Article
15.

Toward DNA-based Security Circuitry: First Step - Random Number Generation.

Bogard CM, Arazi B, Rouchka EC.

Conf Proc (Midwest Symp Circuits Syst). 2008 Aug 10;51:597-600.

PMID:
20436783
[PubMed]
Free PMC Article
16.

Model Based Unsupervised Learning Guided by Abundant Background Samples.

Mahdi RN, Rouchka EC.

Proc Int Conf Mach Learn. 2008;7(4724976):203-210.

PMID:
20436793
[PubMed]
Free PMC Article
17.

DNA Media Storage.

Bogard CM, Rouchka EC.

Int Conf Bioinspired Comput Theor Appl. 2007 Sep;2007:236-239.

PMID:
20622994
[PubMed]
Free PMC Article
18.

In Silico characterization of phosphorylase kinase: evidence for an alternate intronic polyadenylation site in PHKG1.

Winchester JS, Rouchka EC, Rowland NS, Rice NA.

Mol Genet Metab. 2007 Nov;92(3):234-42. Epub 2007 Aug 9.

PMID:
17692548
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

rMotifGen: random motif generator for DNA and protein sequences.

Rouchka EC, Hardin CT.

BMC Bioinformatics. 2007 Aug 7;8:292.

PMID:
17683637
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrative database management for mouse development: systems and concepts.

Singh AV, Rouchka EC, Rempala GA, Bastian CD, Knudsen TB.

Birth Defects Res C Embryo Today. 2007 Mar;81(1):1-19. Review.

PMID:
17539026
[PubMed - indexed for MEDLINE]

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