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Results: 1 to 20 of 259

1.

More challenges for machine learning protein interactions.

Hamp T, Rost B.

Bioinformatics. 2015 Jan 12. pii: btu857. [Epub ahead of print]

PMID:
25586513
[PubMed - as supplied by publisher]
2.

Evaluation of transmembrane helix predictions in 2014.

Reeb J, Kloppmann E, Bernhofer M, Rost B.

Proteins. 2014 Dec 26. doi: 10.1002/prot.24749. [Epub ahead of print]

PMID:
25546441
[PubMed - as supplied by publisher]
3.

Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis.

Rokitta SD, Von Dassow P, Rost B, John U.

BMC Genomics. 2014 Dec 2;15:1051. doi: 10.1186/1471-2164-15-1051.

PMID:
25467008
[PubMed - in process]
Free PMC Article
4.

Cellular inorganic carbon fluxes in Trichodesmium: a combined approach using measurements and modelling.

Eichner M, Thoms S, Kranz SA, Rost B.

J Exp Bot. 2014 Nov 26. pii: eru427. [Epub ahead of print]

PMID:
25429001
[PubMed - as supplied by publisher]
Free Article
5.

Structure and selectivity in bestrophin ion channels.

Yang T, Liu Q, Kloss B, Bruni R, Kalathur RC, Guo Y, Kloppmann E, Rost B, Colecraft HM, Hendrickson WA.

Science. 2014 Oct 17;346(6207):355-9. doi: 10.1126/science.1259723. Epub 2014 Sep 25.

PMID:
25324390
[PubMed - indexed for MEDLINE]
6.

Clathrin regenerates synaptic vesicles from endosomes.

Watanabe S, Trimbuch T, Camacho-Pérez M, Rost BR, Brokowski B, Söhl-Kielczynski B, Felies A, Davis MW, Rosenmund C, Jorgensen EM.

Nature. 2014 Nov 13;515(7526):228-33. doi: 10.1038/nature13846. Epub 2014 Oct 8.

PMID:
25296249
[PubMed - indexed for MEDLINE]
7.

Taking structure searches to the next dimension.

Schafferhans A, Rost B.

Structure. 2014 Jul 8;22(7):938-9. doi: 10.1016/j.str.2014.06.007.

PMID:
25007224
[PubMed - in process]
8.

Structural basis for a pH-sensitive calcium leak across membranes.

Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q.

Science. 2014 Jun 6;344(6188):1131-5. doi: 10.1126/science.1252043.

PMID:
24904158
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

HeatMapViewer: interactive display of 2D data in biology.

Yachdav G, Hecht M, Pasmanik-Chor M, Yeheskel A, Rost B.

F1000Res. 2014 Feb 13;3:48. doi: 10.12688/f1000research.3-48.v1. eCollection 2014.

PMID:
24860644
[PubMed]
Free PMC Article
10.

LocTree3 prediction of localization.

Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, Bernhofer M, Betz A, Cizmadija L, Do KT, Gerke J, Greil R, Joerdens V, Hastreiter M, Hembach K, Herzog M, Kalemanov M, Kluge M, Meier A, Nasir H, Neumaier U, Prade V, Reeb J, Sorokoumov A, Troshani I, Vorberg S, Waldraff S, Zierer J, Nielsen H, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396. Epub 2014 May 21.

PMID:
24848019
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PredictProtein--an open resource for online prediction of protein structural and functional features.

Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5.

PMID:
24799431
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The impact of iron limitation on the physiology of the Antarctic diatom Chaetoceros simplex.

Petrou K, Trimborn S, Rost B, Ralph PJ, Hassler CS.

Mar Biol. 2014;161(4):925-937. Epub 2014 Jan 29.

PMID:
24719494
[PubMed]
Free PMC Article
13.

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Cejuela JM, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B; FlyBase Consortium.

Database (Oxford). 2014 Apr 7;2014(0):bau033. doi: 10.1093/database/bau033. Print 2014.

PMID:
24715220
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

FreeContact: fast and free software for protein contact prediction from residue co-evolution.

Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B.

BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.

PMID:
24669753
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Strong shift from HCO3 (-) to CO 2 uptake in Emiliania huxleyi with acidification: new approach unravels acclimation versus short-term pH effects.

Kottmeier DM, Rokitta SD, Tortell PD, Rost B.

Photosynth Res. 2014 Sep;121(2-3):265-75. doi: 10.1007/s11120-014-9984-9. Epub 2014 Feb 23.

PMID:
24563097
[PubMed - in process]
Free PMC Article
16.

Combined effects of different CO2 levels and N sources on the diazotrophic cyanobacterium Trichodesmium.

Eichner M, Kranz SA, Rost B.

Physiol Plant. 2014 Oct;152(2):316-30. doi: 10.1111/ppl.12172. Epub 2014 Mar 26.

PMID:
24547877
[PubMed - in process]
Free PMC Article
17.

Co-expression and co-localization of hub proteins and their partners are encoded in protein sequence.

Feiglin A, Ashkenazi S, Schlessinger A, Rost B, Ofran Y.

Mol Biosyst. 2014 Apr;10(4):787-94. doi: 10.1039/c3mb70411d. Epub 2014 Jan 23.

PMID:
24457447
[PubMed - indexed for MEDLINE]
18.

Evolutionary potential of marine phytoplankton under ocean acidification.

Collins S, Rost B, Rynearson TA.

Evol Appl. 2014 Jan;7(1):140-55. doi: 10.1111/eva.12120. Epub 2013 Nov 25.

PMID:
24454553
[PubMed]
Free PMC Article
19.

ISCB: past-present perspective for the International Society for Computational Biology.

Rost B.

Bioinformatics. 2014 Jan 1;30(1):143-5. doi: 10.1093/bioinformatics/btt669.

PMID:
24352412
[PubMed - indexed for MEDLINE]
Free Article
20.

Differential effects of ocean acidification on carbon acquisition in two bloom-forming dinoflagellate species.

Eberlein T, Van de Waal DB, Rost B.

Physiol Plant. 2014 Aug;151(4):468-79. doi: 10.1111/ppl.12137. Epub 2014 Jan 24.

PMID:
24320746
[PubMed - in process]
Free PMC Article

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