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Results: 1 to 20 of 264


Ocean acidification decreases the light-use efficiency in an Antarctic diatom under dynamic but not constant light.

Hoppe CJ, Holtz LM, Trimborn S, Rost B.

New Phytol. 2015 Feb 24. doi: 10.1111/nph.13334. [Epub ahead of print]


Evolutionary profiles improve protein-protein interaction prediction from sequence.

Hamp T, Rost B.

Bioinformatics. 2015 Feb 4. pii: btv077. [Epub ahead of print]


Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B.

Bioinformatics. 2015 Feb 15;31(4):616-7. doi: 10.1093/bioinformatics/btv019. Epub 2015 Feb 2.


Protein structure. Structure and activity of tryptophan-rich TSPO proteins.

Guo Y, Kalathur RC, Liu Q, Kloss B, Bruni R, Ginter C, Kloppmann E, Rost B, Hendrickson WA.

Science. 2015 Jan 30;347(6221):551-5. doi: 10.1126/science.aaa1534.


Aquaria: simplifying discovery and insight from protein structures.

O'Donoghue SI, Sabir KS, Kalemanov M, Stolte C, Wellmann B, Ho V, Roos M, Perdigão N, Buske FA, Heinrich J, Rost B, Schafferhans A.

Nat Methods. 2015 Feb;12(2):98-9. doi: 10.1038/nmeth.3258. No abstract available.


More challenges for machine-learning protein interactions.

Hamp T, Rost B.

Bioinformatics. 2015 Jan 12. pii: btu857. [Epub ahead of print]


Evaluation of transmembrane helix predictions in 2014.

Reeb J, Kloppmann E, Bernhofer M, Rost B.

Proteins. 2015 Mar;83(3):473-84. doi: 10.1002/prot.24749. Epub 2015 Jan 22.


Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis.

Rokitta SD, Von Dassow P, Rost B, John U.

BMC Genomics. 2014 Dec 2;15:1051. doi: 10.1186/1471-2164-15-1051.


Cellular inorganic carbon fluxes in Trichodesmium: a combined approach using measurements and modelling.

Eichner M, Thoms S, Kranz SA, Rost B.

J Exp Bot. 2015 Feb;66(3):749-59. doi: 10.1093/jxb/eru427. Epub 2014 Nov 26.


Structure and selectivity in bestrophin ion channels.

Yang T, Liu Q, Kloss B, Bruni R, Kalathur RC, Guo Y, Kloppmann E, Rost B, Colecraft HM, Hendrickson WA.

Science. 2014 Oct 17;346(6207):355-9. doi: 10.1126/science.1259723. Epub 2014 Sep 25.


Clathrin regenerates synaptic vesicles from endosomes.

Watanabe S, Trimbuch T, Camacho-Pérez M, Rost BR, Brokowski B, Söhl-Kielczynski B, Felies A, Davis MW, Rosenmund C, Jorgensen EM.

Nature. 2014 Nov 13;515(7526):228-33. doi: 10.1038/nature13846. Epub 2014 Oct 8.


Taking structure searches to the next dimension.

Schafferhans A, Rost B.

Structure. 2014 Jul 8;22(7):938-9. doi: 10.1016/j.str.2014.06.007.


Structural basis for a pH-sensitive calcium leak across membranes.

Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q.

Science. 2014 Jun 6;344(6188):1131-5. doi: 10.1126/science.1252043.


HeatMapViewer: interactive display of 2D data in biology.

Yachdav G, Hecht M, Pasmanik-Chor M, Yeheskel A, Rost B.

F1000Res. 2014 Feb 13;3:48. doi: 10.12688/f1000research.3-48.v1. eCollection 2014.


LocTree3 prediction of localization.

Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, Bernhofer M, Betz A, Cizmadija L, Do KT, Gerke J, Greil R, Joerdens V, Hastreiter M, Hembach K, Herzog M, Kalemanov M, Kluge M, Meier A, Nasir H, Neumaier U, Prade V, Reeb J, Sorokoumov A, Troshani I, Vorberg S, Waldraff S, Zierer J, Nielsen H, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396. Epub 2014 May 21.


PredictProtein--an open resource for online prediction of protein structural and functional features.

Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5.


The impact of iron limitation on the physiology of the Antarctic diatom Chaetoceros simplex.

Petrou K, Trimborn S, Rost B, Ralph PJ, Hassler CS.

Mar Biol. 2014;161(4):925-937. Epub 2014 Jan 29.


tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Cejuela JM, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B; FlyBase Consortium.

Database (Oxford). 2014 Apr 7;2014(0):bau033. doi: 10.1093/database/bau033. Print 2014.


FreeContact: fast and free software for protein contact prediction from residue co-evolution.

Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B.

BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.


Strong shift from HCO3 (-) to CO 2 uptake in Emiliania huxleyi with acidification: new approach unravels acclimation versus short-term pH effects.

Kottmeier DM, Rokitta SD, Tortell PD, Rost B.

Photosynth Res. 2014 Sep;121(2-3):265-75. doi: 10.1007/s11120-014-9984-9. Epub 2014 Feb 23.

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