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Items: 1 to 20 of 282

1.

Combined Effects of Ocean Acidification and Light or Nitrogen Availabilities on 13C Fractionation in Marine Dinoflagellates.

Hoins M, Eberlein T, Groβmann CH, Brandenburg K, Reichart GJ, Rost B, Sluijs A, Van de Waal DB.

PLoS One. 2016 May 6;11(5):e0154370. doi: 10.1371/journal.pone.0154370. eCollection 2016.

2.

Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi.

Kottmeier DM, Rokitta SD, Rost B.

New Phytol. 2016 Jul;211(1):126-37. doi: 10.1111/nph.13885. Epub 2016 Feb 25.

PMID:
26918275
3.

Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.

Petrou VI, Herrera CM, Schultz KM, Clarke OB, Vendome J, Tomasek D, Banerjee S, Rajashankar KR, Belcher Dufrisne M, Kloss B, Kloppmann E, Rost B, Klug CS, Trent MS, Shapiro L, Mancia F.

Science. 2016 Feb 5;351(6273):608-12. doi: 10.1126/science.aad1172.

PMID:
26912703
4.

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC).

Neuhaus K, Landstorfer R, Fellner L, Simon S, Schafferhans A, Goldberg T, Marx H, Ozoline ON, Rost B, Kuster B, Keim DA, Scherer S.

BMC Genomics. 2016 Feb 24;17:133. doi: 10.1186/s12864-016-2456-1.

5.

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human.

Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR.

Nat Commun. 2016 Feb 10;7:10706. doi: 10.1038/ncomms10706. No abstract available.

6.

Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.

Ardiccioni C, Clarke OB, Tomasek D, Issa HA, von Alpen DC, Pond HL, Banerjee S, Rajashankar KR, Liu Q, Guan Z, Li C, Kloss B, Bruni R, Kloppmann E, Rost B, Manzini MC, Shapiro L, Mancia F.

Nat Commun. 2016 Jan 5;7:10175. doi: 10.1038/ncomms10175.

PMID:
26729507
7.

Protein disorder reduced in Saccharomyces cerevisiae to survive heat shock.

Vicedo E, Gasik Z, Dong YA, Goldberg T, Rost B.

F1000Res. 2015 Nov 6;4:1222. doi: 10.12688/f1000research.7178.1. eCollection 2015.

8.

Unexpected features of the dark proteome.

Perdigão N, Heinrich J, Stolte C, Sabir KS, Buckley MJ, Tabor B, Signal B, Gloss BS, Hammang CJ, Rost B, Schafferhans A, O'Donoghue SI.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15898-903. doi: 10.1073/pnas.1508380112. Epub 2015 Nov 17.

9.

Optogenetic acidification of synaptic vesicles and lysosomes.

Rost BR, Schneider F, Grauel MK, Wozny C, Bentz CG, Blessing A, Rosenmund T, Jentsch TJ, Schmitz D, Hegemann P, Rosenmund C.

Nat Neurosci. 2015 Dec;18(12):1845-52. doi: 10.1038/nn.4161. Epub 2015 Nov 9.

10.

Tools and data services registry: a community effort to document bioinformatics resources.

Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S.

Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3.

11.

Vesicular Synaptobrevin/VAMP2 Levels Guarded by AP180 Control Efficient Neurotransmission.

Koo SJ, Kochlamazashvili G, Rost B, Puchkov D, Gimber N, Lehmann M, Tadeus G, Schmoranzer J, Rosenmund C, Haucke V, Maritzen T.

Neuron. 2015 Oct 21;88(2):330-44. doi: 10.1016/j.neuron.2015.08.034. Epub 2015 Sep 24.

PMID:
26412491
12.

Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes.

Vicedo E, Schlessinger A, Rost B.

PLoS One. 2015 Aug 7;10(8):e0133990. doi: 10.1371/journal.pone.0133990. eCollection 2015.

13.

A draft network of ligand-receptor-mediated multicellular signalling in human.

Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR.

Nat Commun. 2015 Jul 22;6:7866. doi: 10.1038/ncomms8866. Erratum in: Nat Commun. 2016;7:10706. Kloppman, Edda [Corrected to Kloppmann, Edda].

14.

Anatomy of BioJS, an open source community for the life sciences.

Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M.

Elife. 2015 Jul 8;4. doi: 10.7554/eLife.07009.

15.

Environmental stability affects phenotypic evolution in a globally distributed marine picoplankton.

Schaum CE, Rost B, Collins S.

ISME J. 2016 Jan;10(1):75-84. doi: 10.1038/ismej.2015.102. Epub 2015 Jun 30.

PMID:
26125683
16.

Better prediction of functional effects for sequence variants.

Hecht M, Bromberg Y, Rost B.

BMC Genomics. 2015;16 Suppl 8:S1. doi: 10.1186/1471-2164-16-S8-S1. Epub 2015 Jun 18.

17.

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.

Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B.

F1000Res. 2015 Jan 15;4:12. doi: 10.12688/f1000research.6038.1. eCollection 2015.

18.

Ocean acidification decreases the light-use efficiency in an Antarctic diatom under dynamic but not constant light.

Hoppe CJ, Holtz LM, Trimborn S, Rost B.

New Phytol. 2015 Jul;207(1):159-71. doi: 10.1111/nph.13334. Epub 2015 Feb 24.

PMID:
25708812
19.

Evolutionary profiles improve protein-protein interaction prediction from sequence.

Hamp T, Rost B.

Bioinformatics. 2015 Jun 15;31(12):1945-50. doi: 10.1093/bioinformatics/btv077. Epub 2015 Feb 4.

20.

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Karp PD, Berger B, Kovats D, Lengauer T, Linial M, Sabeti P, Hide W, Rost B.

Bioinformatics. 2015 Feb 15;31(4):616-7. doi: 10.1093/bioinformatics/btv019. Epub 2015 Feb 2.

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