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Results: 1 to 20 of 21

1.

Draft genome sequence determination for cystic fibrosis and chronic granulomatous disease Burkholderia multivorans isolates.

Varga JJ, Losada L, Zelazny AM, Brinkac L, Harkins D, Radune D, Hostetler J, Sampaio EP, Ronning CM, Nierman WC, Greenberg DE, Holland SM, Goldberg JB.

J Bacteriol. 2012 Nov;194(22):6356-7. doi: 10.1128/JB.01306-12.

PMID:
23105085
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparative genomic analysis of fruiting body formation in Myxococcales.

Huntley S, Hamann N, Wegener-Feldbrügge S, Treuner-Lange A, Kube M, Reinhardt R, Klages S, Müller R, Ronning CM, Nierman WC, Søgaard-Andersen L.

Mol Biol Evol. 2011 Feb;28(2):1083-97. doi: 10.1093/molbev/msq292. Epub 2010 Oct 29.

PMID:
21037205
[PubMed - indexed for MEDLINE]
Free Article
3.

Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements.

Ronning CM, Losada L, Brinkac L, Inman J, Ulrich RL, Schell M, Nierman WC, Deshazer D.

BMC Microbiol. 2010 Jul 28;10:202. doi: 10.1186/1471-2180-10-202.

PMID:
20667135
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways.

Medema MH, Trefzer A, Kovalchuk A, van den Berg M, Müller U, Heijne W, Wu L, Alam MT, Ronning CM, Nierman WC, Bovenberg RA, Breitling R, Takano E.

Genome Biol Evol. 2010 Jul 12;2:212-24. doi: 10.1093/gbe/evq013.

PMID:
20624727
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements.

Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, Schutzer SE, Keim P, Nierman WC.

Genome Biol Evol. 2010 Jan 22;2:102-16. doi: 10.1093/gbe/evq003.

PMID:
20333227
[PubMed]
Free PMC Article
6.

Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists.

Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC.

PLoS One. 2008 Apr 30;3(4):e2058. doi: 10.1371/journal.pone.0002058.

PMID:
18446194
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.

Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC.

PLoS Genet. 2008 Apr 11;4(4):e1000046. doi: 10.1371/journal.pgen.1000046.

PMID:
18404212
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Insights into the Musa genome: syntenic relationships to rice and between Musa species.

Lescot M, Piffanelli P, Ciampi AY, Ruiz M, Blanc G, Leebens-Mack J, da Silva FR, Santos CM, D'Hont A, Garsmeur O, Vilarinhos AD, Kanamori H, Matsumoto T, Ronning CM, Cheung F, Haas BJ, Althoff R, Arbogast T, Hine E, Pappas GJ Jr, Sasaki T, Souza MT Jr, Miller RN, Glaszmann JC, Town CD.

BMC Genomics. 2008 Jan 30;9:58. doi: 10.1186/1471-2164-9-58.

PMID:
18234080
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene profiling for studying the mechanism of aflatoxin biosynthesis in Aspergillus flavus and A. parasiticus.

Yu J, Ronning CM, Wilkinson JR, Campbell BC, Payne GA, Bhatnagar D, Cleveland TE, Nierman WC.

Food Addit Contam. 2007 Oct;24(10):1035-42.

PMID:
17886175
[PubMed - indexed for MEDLINE]
10.

Evolution of sensory complexity recorded in a myxobacterial genome.

Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, Mackenzie C, Madupu R, Miller N, Shvartsbeyn A, Sullivan SA, Vaudin M, Wiegand R, Kaplan HB.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):15200-5. Epub 2006 Oct 2. Erratum in: Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19605. Eisen, J [corrected to Eisen, J A].

PMID:
17015832
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts.

Romero CM, DeShazer D, Feldblyum T, Ravel J, Woods D, Kim HS, Yu Y, Ronning CM, Nierman WC.

BMC Genomics. 2006 Sep 5;7:228.

PMID:
16953889
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomics of Aspergillus fumigatus.

Ronning CM, Fedorova ND, Bowyer P, Coulson R, Goldman G, Kim HS, Turner G, Wortman JR, Yu J, Anderson MJ, Denning DW, Nierman WC.

Rev Iberoam Micol. 2005 Dec;22(4):223-8. Review.

PMID:
16499415
[PubMed - indexed for MEDLINE]
Free Article
13.

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.

Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW.

Nature. 2005 Dec 22;438(7071):1151-6. Erratum in: Nature. 2006 Jan 26;439(7075):502. Lafton, Anne [corrected to Lafon, Anne].

PMID:
16372009
[PubMed - indexed for MEDLINE]
14.

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK Jr, Maiti R, Chan AP, Yu C, Farzad M, Wu D, White O, Town CD.

BMC Biol. 2005 Mar 22;3:7.

PMID:
15784138
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Structural flexibility in the Burkholderia mallei genome.

Nierman WC, DeShazer D, Kim HS, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC, Davidsen TD, Deboy RT, Dimitrov G, Dodson RJ, Durkin AS, Gwinn ML, Haft DH, Khouri H, Kolonay JF, Madupu R, Mohammoud Y, Nelson WC, Radune D, Romero CM, Sarria S, Selengut J, Shamblin C, Sullivan SA, White O, Yu Y, Zafar N, Zhou L, Fraser CM.

Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14246-51. Epub 2004 Sep 17.

PMID:
15377793
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comprehensive EST analysis of tomato and comparative genomics of fruit ripening.

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ.

Plant J. 2004 Oct;40(1):47-59.

PMID:
15361140
[PubMed - indexed for MEDLINE]
17.

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O.

Nucleic Acids Res. 2003 Oct 1;31(19):5654-66.

PMID:
14500829
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Annotation of the Arabidopsis genome.

Wortman JR, Haas BJ, Hannick LI, Smith RK Jr, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD.

Plant Physiol. 2003 Jun;132(2):461-8. No abstract available.

PMID:
12805579
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative analyses of potato expressed sequence tag libraries.

Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, Utterbach TR, Vanaken SE, Riedmuller SB, White JA, Cho J, Pertea GM, Lee Y, Karamycheva S, Sultana R, Tsai J, Quackenbush J, Griffiths HM, Restrepo S, Smart CD, Fry WE, Van Der Hoeven R, Tanksley S, Zhang P, Jin H, Yamamoto ML, Baker BJ, Buell CR.

Plant Physiol. 2003 Feb;131(2):419-29.

PMID:
12586867
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.

Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, Koo HL, Moffat KS, Cronin LA, Shen M, Pai G, Van Aken S, Umayam L, Tallon LJ, Gill JE, Adams MD, Carrera AJ, Creasy TH, Goodman HM, Somerville CR, Copenhaver GP, Preuss D, Nierman WC, White O, Eisen JA, Salzberg SL, Fraser CM, Venter JC.

Nature. 1999 Dec 16;402(6763):761-8.

PMID:
10617197
[PubMed - indexed for MEDLINE]

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