Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 55

1.

Conservation of Transcription Start Sites within Genes across a Bacterial Genus.

Shao W, Price MN, Deutschbauer AM, Romine MF, Arkin AP.

MBio. 2014 Jul 1;5(4). pii: e01398-14. doi: 10.1128/mBio.01398-14.

PMID:
24987095
[PubMed - in process]
Free Article
2.

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.

Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Steven Wiley H, Fredrickson JK, Konopka A.

ISME J. 2014 Apr 29. doi: 10.1038/ismej.2014.69. [Epub ahead of print]

PMID:
24781900
[PubMed - as supplied by publisher]
3.

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.

Ong WK, Vu TT, Lovendahl KN, Llull JM, Serres MH, Romine MF, Reed JL.

BMC Syst Biol. 2014 Mar 12;8:31. doi: 10.1186/1752-0509-8-31.

PMID:
24621294
[PubMed - in process]
Free PMC Article
4.

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a.

Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK.

Genome Announc. 2014 Jan 30;2(1). pii: e01060-13. doi: 10.1128/genomeA.01060-13.

PMID:
24482507
[PubMed]
Free PMC Article
5.

Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium.

Sadler NC, Melnicki MR, Serres MH, Merkley ED, Chrisler WB, Hill EA, Romine MF, Kim S, Zink EM, Datta S, Smith RD, Beliaev AS, Konopka A, Wright AT.

ACS Chem Biol. 2014 Jan 17;9(1):291-300. doi: 10.1021/cb400769v. Epub 2013 Nov 6.

PMID:
24168666
[PubMed - in process]
6.

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

Taylor RC, Webb Robertson BJ, Markillie LM, Serres MH, Linggi BE, Aldrich JT, Hill EA, Romine MF, Lipton MS, Wiley HS.

Integr Biol (Camb). 2013 Nov;5(11):1393-406. doi: 10.1039/c3ib40120k. Epub 2013 Sep 30.

PMID:
24081429
[PubMed - indexed for MEDLINE]
7.

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA.

J Biol Chem. 2011 Oct 14;286(41):35782-94. doi: 10.1074/jbc.M111.267963. Epub 2011 Aug 17.

PMID:
21849503
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

PMID:
21810205
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-wide protein localization prediction strategies for gram negative bacteria.

Romine MF.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S1. doi: 10.1186/1471-2164-12-S1-S1.

PMID:
21810203
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM.

BMC Microbiol. 2011 Mar 30;11:64. doi: 10.1186/1471-2180-11-64.

PMID:
21450087
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics.

Cao B, Shi L, Brown RN, Xiong Y, Fredrickson JK, Romine MF, Marshall MJ, Lipton MS, Beyenal H.

Environ Microbiol. 2011 Apr;13(4):1018-31. doi: 10.1111/j.1462-2920.2010.02407.x. Epub 2011 Jan 19.

PMID:
21251176
[PubMed - indexed for MEDLINE]
12.

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.

Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL.

BMC Genomics. 2010 Sep 13;11:494. doi: 10.1186/1471-2164-11-494.

PMID:
20836887
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Mapping the subcellular proteome of Shewanella oneidensis MR-1 using sarkosyl-based fractionation and LC-MS/MS protein identification.

Brown RN, Romine MF, Schepmoes AA, Smith RD, Lipton MS.

J Proteome Res. 2010 Sep 3;9(9):4454-63. doi: 10.1021/pr100215h.

PMID:
20690604
[PubMed - indexed for MEDLINE]
14.

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.

Karpinets TV, Romine MF, Schmoyer DD, Kora GH, Syed MH, Leuze MR, Serres MH, Park BH, Samatova NF, Uberbacher EC.

Database (Oxford). 2010 Jul 6;2010:baq012. doi: 10.1093/database/baq012.

PMID:
20627862
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation.

Pinchuk GE, Hill EA, Geydebrekht OV, De Ingeniis J, Zhang X, Osterman A, Scott JH, Reed SB, Romine MF, Konopka AE, Beliaev AS, Fredrickson JK, Reed JL.

PLoS Comput Biol. 2010 Jun 24;6(6):e1000822. doi: 10.1371/journal.pcbi.1000822.

PMID:
20589080
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.

Zhang H, Brown RN, Qian WJ, Monroe ME, Purvine SO, Moore RJ, Gritsenko MA, Shi L, Romine MF, Fredrickson JK, Pasa-Tolić L, Smith RD, Lipton MS.

J Proteome Res. 2010 May 7;9(5):2160-9. doi: 10.1021/pr9009113.

PMID:
20380418
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Electrokinesis is a microbial behavior that requires extracellular electron transport.

Harris HW, El-Naggar MY, Bretschger O, Ward MJ, Romine MF, Obraztsova AY, Nealson KH.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):326-31. doi: 10.1073/pnas.0907468107. Epub 2009 Dec 14.

PMID:
20018675
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative systems biology across an evolutionary gradient within the Shewanella genus.

Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15909-14. doi: 10.1073/pnas.0902000106. Epub 2009 Sep 1.

PMID:
19805231
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes.

Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC.

Funct Integr Genomics. 2010 Mar;10(1):97-110. doi: 10.1007/s10142-009-0142-y. Epub 2009 Oct 3.

PMID:
19802638
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.

Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J.

ISME J. 2009 Aug;3(8):966-76. doi: 10.1038/ismej.2009.40. Epub 2009 Apr 23.

PMID:
19387485
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk