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Items: 1 to 20 of 63

1.

Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1.

Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D.

Microbiology. 2016 Mar 23. doi: 10.1099/mic.0.000285. [Epub ahead of print]

PMID:
27010745
2.

Formaldehyde as a carbon and electron shuttle between autotroph and heterotroph populations in acidic hydrothermal vents of Norris Geyser Basin, Yellowstone National Park.

Moran JJ, Whitmore LM, Isern NG, Romine MF, Riha KM, Inskeep WP, Kreuzer HW.

Extremophiles. 2016 May;20(3):291-9. doi: 10.1007/s00792-016-0821-2. Epub 2016 Mar 19.

PMID:
26995682
3.

Live Cell Discovery of Microbial Vitamin Transport and Enzyme-Cofactor Interactions.

Anderson LN, Koech PK, Plymale AE, Landorf EV, Konopka A, Collart FR, Lipton MS, Romine MF, Wright AT.

ACS Chem Biol. 2016 Feb 19;11(2):345-54. doi: 10.1021/acschembio.5b00918. Epub 2015 Dec 22.

PMID:
26669591
4.

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142.

Bernstein HC, Charania MA, McClure RS, Sadler NC, Melnicki MR, Hill EA, Markillie LM, Nicora CD, Wright AT, Romine MF, Beliaev AS.

Sci Rep. 2015 Nov 3;5:16004. doi: 10.1038/srep16004.

5.

Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.

Nelson WC, Maezato Y, Wu YW, Romine MF, Lindemann SR.

Appl Environ Microbiol. 2015 Oct 23;82(1):255-67. doi: 10.1128/AEM.02274-15.

6.

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.

Beam JP, Jay ZJ, Schmid MC, Rusch DB, Romine MF, Jennings Rde M, Kozubal MA, Tringe SG, Wagner M, Inskeep WP.

ISME J. 2016 Jan;10(1):210-24. doi: 10.1038/ismej.2015.83. Epub 2015 Jul 3.

7.

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.

Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA.

Environ Microbiol Rep. 2015 Apr;7(2):204-10. doi: 10.1111/1758-2229.12227. Epub 2014 Dec 17.

PMID:
25345570
8.

Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components.

Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck JH, El-Naggar MY.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12883-8. doi: 10.1073/pnas.1410551111. Epub 2014 Aug 20.

9.

Conservation of transcription start sites within genes across a bacterial genus.

Shao W, Price MN, Deutschbauer AM, Romine MF, Arkin AP.

MBio. 2014 Jul 1;5(4):e01398-14. doi: 10.1128/mBio.01398-14.

10.

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.

Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A.

ISME J. 2014 Nov;8(11):2243-55. doi: 10.1038/ismej.2014.69. Epub 2014 Apr 29.

PMID:
24781900
11.

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.

Ong WK, Vu TT, Lovendahl KN, Llull JM, Serres MH, Romine MF, Reed JL.

BMC Syst Biol. 2014 Mar 12;8:31. doi: 10.1186/1752-0509-8-31.

12.

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a.

Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK.

Genome Announc. 2014 Jan 30;2(1). pii: e01060-13. doi: 10.1128/genomeA.01060-13.

13.

Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium.

Sadler NC, Melnicki MR, Serres MH, Merkley ED, Chrisler WB, Hill EA, Romine MF, Kim S, Zink EM, Datta S, Smith RD, Beliaev AS, Konopka A, Wright AT.

ACS Chem Biol. 2014 Jan 17;9(1):291-300. doi: 10.1021/cb400769v. Epub 2013 Nov 6.

PMID:
24168666
14.

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

Taylor RC, Webb Robertson BJ, Markillie LM, Serres MH, Linggi BE, Aldrich JT, Hill EA, Romine MF, Lipton MS, Wiley HS.

Integr Biol (Camb). 2013 Nov;5(11):1393-406. doi: 10.1039/c3ib40120k. Epub 2013 Sep 30.

15.

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA.

J Biol Chem. 2011 Oct 14;286(41):35782-94. doi: 10.1074/jbc.M111.267963. Epub 2011 Aug 17.

16.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

17.

Genome-wide protein localization prediction strategies for gram negative bacteria.

Romine MF.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S1. doi: 10.1186/1471-2164-12-S1-S1.

18.

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM.

BMC Microbiol. 2011 Mar 30;11:64. doi: 10.1186/1471-2180-11-64.

19.

Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics.

Cao B, Shi L, Brown RN, Xiong Y, Fredrickson JK, Romine MF, Marshall MJ, Lipton MS, Beyenal H.

Environ Microbiol. 2011 Apr;13(4):1018-31. doi: 10.1111/j.1462-2920.2010.02407.x. Epub 2011 Jan 19.

PMID:
21251176
20.

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.

Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL.

BMC Genomics. 2010 Sep 13;11:494. doi: 10.1186/1471-2164-11-494.

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