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Results: 1 to 20 of 69

1.

Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.

Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL.

MBio. 2014 Mar 18;5(2):e00956-13. doi: 10.1128/mBio.00956-13.

PMID:
24643867
[PubMed - in process]
Free PMC Article
2.

Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

Lim YW, Evangelista JS 3rd, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D.

J Clin Microbiol. 2014 Feb;52(2):425-37. doi: 10.1128/JCM.02204-13. Epub 2013 Nov 20.

PMID:
24478471
[PubMed - in process]
Free PMC Article
3.

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.

Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F.

ISME J. 2014 Jun;8(6):1247-58. doi: 10.1038/ismej.2013.229. Epub 2014 Jan 9.

PMID:
24401860
[PubMed - in process]
Free PMC Article
4.

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20236-41. doi: 10.1073/pnas.1319470110. Epub 2013 Nov 20.

PMID:
24259713
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Innate and acquired bacteriophage-mediated immunity.

Barr JJ, Youle M, Rohwer F.

Bacteriophage. 2013 Jul 1;3(3):e25857. Epub 2013 Jul 29.

PMID:
24228227
[PubMed]
Free PMC Article
6.

Influence of coral and algal exudates on microbially mediated reef metabolism.

Haas AF, Nelson CE, Rohwer F, Wegley-Kelly L, Quistad SD, Carlson CA, Leichter JJ, Hatay M, Smith JE.

PeerJ. 2013 Jul 16;1:e108. doi: 10.7717/peerj.108. Print 2013.

PMID:
23882445
[PubMed]
Free PMC Article
7.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates.

Gregg A, Hatay M, Haas A, Robinett N, Barott K, Vermeij M, Marhaver K, Meirelles P, Thompson F, Rohwer F.

PeerJ. 2013 Jul 16;1:e107. doi: 10.7717/peerj.107. Print 2013.

PMID:
23882444
[PubMed]
Free PMC Article
8.

Visualization of oxygen distribution patterns caused by coral and algae.

Haas AF, Gregg AK, Smith JE, Abieri ML, Hatay M, Rohwer F.

PeerJ. 2013 Jul 16;1:e106. doi: 10.7717/peerj.106. Print 2013.

PMID:
23882443
[PubMed]
Free PMC Article
9.

Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data.

Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F.

PLoS One. 2013 May 30;8(5):e64285. doi: 10.1371/journal.pone.0064285. Print 2013.

PMID:
23737977
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bacteriophage adhering to mucus provide a non-host-derived immunity.

Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10771-6. doi: 10.1073/pnas.1305923110. Epub 2013 May 20.

PMID:
23690590
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.

Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F.

PLoS One. 2013;8(3):e58404. doi: 10.1371/journal.pone.0058404. Epub 2013 Mar 15.

PMID:
23554892
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Viral information.

Rohwer F, Barott K.

Biol Philos. 2013 Mar;28(2):283-297. Epub 2012 Oct 31.

PMID:
23482918
[PubMed]
Free PMC Article
13.

Structure and function of a cyanophage-encoded peptide deformylase.

Frank JA, Lorimer D, Youle M, Witte P, Craig T, Abendroth J, Rohwer F, Edwards RA, Segall AM, Burgin AB Jr.

ISME J. 2013 Jun;7(6):1150-60. doi: 10.1038/ismej.2013.4. Epub 2013 Feb 14.

PMID:
23407310
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Nelson CE, Goldberg SJ, Wegley Kelly L, Haas AF, Smith JE, Rohwer F, Carlson CA.

ISME J. 2013 May;7(5):962-79. doi: 10.1038/ismej.2012.161. Epub 2013 Jan 10.

PMID:
23303369
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Environmental distribution of coral-associated relatives of apicomplexan parasites.

Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ.

ISME J. 2013 Feb;7(2):444-7. doi: 10.1038/ismej.2012.129. Epub 2012 Nov 15.

PMID:
23151646
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Mucus distribution model in a lung with cystic fibrosis.

Zarei S, Mirtar A, Rohwer F, Conrad DJ, Theilmann RJ, Salamon P.

Comput Math Methods Med. 2012;2012:970809. doi: 10.1155/2012/970809. Epub 2012 Oct 17.

PMID:
23118803
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Cystic fibrosis therapy: a community ecology perspective.

Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F.

Am J Respir Cell Mol Biol. 2013 Feb;48(2):150-6. doi: 10.1165/rcmb.2012-0059PS. Epub 2012 Oct 25. Review.

PMID:
23103995
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Assessing coral reefs on a Pacific-wide scale using the microbialization score.

McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, Brainard RE, Rohwer F.

PLoS One. 2012;7(9):e43233. doi: 10.1371/journal.pone.0043233. Epub 2012 Sep 7.

PMID:
22970122
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities.

Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F.

J Cyst Fibros. 2012 Aug 28. [Epub ahead of print]

PMID:
22951208
[PubMed - as supplied by publisher]
Free PMC Article
20.

Going viral: next-generation sequencing applied to phage populations in the human gut.

Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI.

Nat Rev Microbiol. 2012 Sep;10(9):607-17. doi: 10.1038/nrmicro2853. Epub 2012 Aug 6. Review.

PMID:
22864264
[PubMed - indexed for MEDLINE]
Free PMC Article

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