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Results: 1 to 20 of 183

1.

Impairment of translation in neurons as a putative causative factor for autism.

Poliakov E, Koonin EV, Rogozin IB.

Biol Direct. 2014 Jul 10;9(1):16. doi: 10.1186/1745-6150-9-16.

PMID:
25011470
[PubMed - in process]
Free Article
2.

Gene family level comparative analysis of gene expression in mammals validates the ortholog conjecture.

Rogozin IB, Managadze D, Shabalina SA, Koonin EV.

Genome Biol Evol. 2014 Apr;6(4):754-62. doi: 10.1093/gbe/evu051.

PMID:
24610837
[PubMed - in process]
Free Article
3.

Genetic characterization of feline calicivirus strains associated with varying disease manifestations during an outbreak season in Missouri (1995-1996).

Prikhodko VG, Sandoval-Jaime C, Abente EJ, Bok K, Parra GI, Rogozin IB, Ostlund EN, Green KY, Sosnovtsev SV.

Virus Genes. 2014 Feb;48(1):96-110. doi: 10.1007/s11262-013-1005-0. Epub 2013 Nov 12.

PMID:
24217871
[PubMed - in process]
4.

Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase.

Lada AG, Stepchenkova EI, Waisertreiger IS, Noskov VN, Dhar A, Eudy JD, Boissy RJ, Hirano M, Rogozin IB, Pavlov YI.

PLoS Genet. 2013;9(9):e1003736. doi: 10.1371/journal.pgen.1003736. Epub 2013 Sep 5.

PMID:
24039593
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The vast, conserved mammalian lincRNome.

Managadze D, Lobkovsky AE, Wolf YI, Shabalina SA, Rogozin IB, Koonin EV.

PLoS Comput Biol. 2013;9(2):e1002917. doi: 10.1371/journal.pcbi.1002917. Epub 2013 Feb 28.

PMID:
23468607
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

AID/APOBEC cytosine deaminase induces genome-wide kataegis.

Lada AG, Dhar A, Boissy RJ, Hirano M, Rubel AA, Rogozin IB, Pavlov YI.

Biol Direct. 2012 Dec 18;7:47; discussion 47. doi: 10.1186/1745-6150-7-47.

PMID:
23249472
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Origin and evolution of retinoid isomerization machinery in vertebrate visual cycle: hint from jawless vertebrates.

Poliakov E, Gubin AN, Stearn O, Li Y, Campos MM, Gentleman S, Rogozin IB, Redmond TM.

PLoS One. 2012;7(11):e49975. doi: 10.1371/journal.pone.0049975. Epub 2012 Nov 27.

PMID:
23209628
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes.

Koonin EV, Csuros M, Rogozin IB.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):93-105. doi: 10.1002/wrna.1143. Epub 2012 Nov 8. Review.

PMID:
23139082
[PubMed - indexed for MEDLINE]
9.

Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools.

Waisertreiger IS, Liston VG, Menezes MR, Kim HM, Lobachev KS, Stepchenkova EI, Tahirov TH, Rogozin IB, Pavlov YI.

Environ Mol Mutagen. 2012 Dec;53(9):699-724. doi: 10.1002/em.21735. Epub 2012 Oct 10. Review.

PMID:
23055184
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Computational prediction of polycomb-associated long non-coding RNAs.

Glazko GV, Zybailov BL, Rogozin IB.

PLoS One. 2012;7(9):e44878. doi: 10.1371/journal.pone.0044878. Epub 2012 Sep 13.

PMID:
23028655
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases.

Hashimoto K, Rogozin IB, Panchenko AR.

Hum Mutat. 2012 Nov;33(11):1566-75. doi: 10.1002/humu.22145. Epub 2012 Jul 16.

PMID:
22753356
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Novel aspects of Kindlin-3 function in humans based on a new case of leukocyte adhesion deficiency III.

Meller J, Malinin NL, Panigrahi S, Kerr BA, Patil A, Ma Y, Venkateswaran L, Rogozin IB, Mohandas N, Ehlayel MS, Podrez EA, Chinen J, Byzova TV.

J Thromb Haemost. 2012 Jul;10(7):1397-408. doi: 10.1111/j.1538-7836.2012.04768.x.

PMID:
22564402
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Origin and evolution of spliceosomal introns.

Rogozin IB, Carmel L, Csuros M, Koonin EV.

Biol Direct. 2012 Apr 16;7:11. doi: 10.1186/1745-6150-7-11. Review.

PMID:
22507701
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs.

Managadze D, Rogozin IB, Chernikova D, Shabalina SA, Koonin EV.

Genome Biol Evol. 2011;3:1390-404. doi: 10.1093/gbe/evr116. Epub 2011 Nov 9.

PMID:
22071789
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Replication protein A (RPA) hampers the processive action of APOBEC3G cytosine deaminase on single-stranded DNA.

Lada AG, Waisertreiger IS, Grabow CE, Prakash A, Borgstahl GE, Rogozin IB, Pavlov YI.

PLoS One. 2011;6(9):e24848. doi: 10.1371/journal.pone.0024848. Epub 2011 Sep 15.

PMID:
21935481
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes.

Csuros M, Rogozin IB, Koonin EV.

PLoS Comput Biol. 2011 Sep;7(9):e1002150. doi: 10.1371/journal.pcbi.1002150. Epub 2011 Sep 15.

PMID:
21935348
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.

Iyer LM, Zhang D, Rogozin IB, Aravind L.

Nucleic Acids Res. 2011 Dec;39(22):9473-97. doi: 10.1093/nar/gkr691. Epub 2011 Sep 3.

PMID:
21890906
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes.

Chernikova D, Motamedi S, Csürös M, Koonin EV, Rogozin IB.

Biol Direct. 2011 May 19;6:26. doi: 10.1186/1745-6150-6-26.

PMID:
21595937
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast.

Lada AG, Krick CF, Kozmin SG, Mayorov VI, Karpova TS, Rogozin IB, Pavlov YI.

Biochemistry (Mosc). 2011 Jan;76(1):131-46.

PMID:
21568845
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Tandem termination signal in plant mRNAs.

Kochetov AV, Volkova OA, Poliakov A, Dubchak I, Rogozin IB.

Gene. 2011 Jul 15;481(1):1-6. doi: 10.1016/j.gene.2011.04.002. Epub 2011 Apr 22.

PMID:
21539902
[PubMed - indexed for MEDLINE]
Free PMC Article

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