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Results: 1 to 20 of 41

1.

Normalization of RNA-sequencing data from samples with varying mRNA levels.

Aanes H, Winata C, Moen LF, Østrup O, Mathavan S, Collas P, Rognes T, Aleström P.

PLoS One. 2014 Feb 25;9(2):e89158. doi: 10.1371/journal.pone.0089158. eCollection 2014.

PMID:
24586560
[PubMed - in process]
Free PMC Article
2.

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response.

Booth JA, Thomassen GO, Rowe AD, Weel-Sneve R, Lagesen K, Kristiansen KI, Bjørås M, Rognes T, Lindvall JM.

Sci Rep. 2013 Oct 25;3:3053. doi: 10.1038/srep03053.

PMID:
24157950
[PubMed - in process]
3.

A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures.

Backe PH, Simm R, Laerdahl JK, Dalhus B, Fagerlund A, Okstad OA, Rognes T, Alseth I, Kolstø AB, Bjørås M.

J Struct Biol. 2013 Jul;183(1):66-75. doi: 10.1016/j.jsb.2013.04.007. Epub 2013 Apr 25.

PMID:
23623903
[PubMed - indexed for MEDLINE]
Free Article
4.

Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits.

Søberg K, Jahnsen T, Rognes T, Skålhegg BS, Laerdahl JK.

PLoS One. 2013 Apr 12;8(4):e60935. doi: 10.1371/journal.pone.0060935. Print 2013.

PMID:
23593352
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Single transmembrane peptide DinQ modulates membrane-dependent activities.

Weel-Sneve R, Kristiansen KI, Odsbu I, Dalhus B, Booth J, Rognes T, Skarstad K, Bjørås M.

PLoS Genet. 2013;9(2):e1003260. doi: 10.1371/journal.pgen.1003260. Epub 2013 Feb 7.

PMID:
23408903
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes.

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A.

Nucleic Acids Res. 2012 Nov;40(21):10950-63. doi: 10.1093/nar/gks839. Epub 2012 Sep 10.

PMID:
22965116
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

ALKBH1 is a histone H2A dioxygenase involved in neural differentiation.

Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E.

Stem Cells. 2012 Dec;30(12):2672-82. doi: 10.1002/stem.1228.

PMID:
22961808
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification and characterization of novel mutations in the human gene encoding the catalytic subunit Calpha of protein kinase A (PKA).

Søberg K, Larsen AC, Diskar M, Backe PH, Bjørås M, Jahnsen T, Laerdahl JK, Rognes T, Herberg FW, Skålhegg BS.

PLoS One. 2012;7(4):e34838. doi: 10.1371/journal.pone.0034838. Epub 2012 Apr 13.

PMID:
22514673
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.

Rognes T.

BMC Bioinformatics. 2011 Jun 1;12:221. doi: 10.1186/1471-2105-12-221.

PMID:
21631914
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage.

Yang M, Aamodt RM, Dalhus B, Balasingham S, Helle I, Andersen P, Tønjum T, Alseth I, Rognes T, Bjørås M.

DNA Repair (Amst). 2011 Jun 10;10(6):595-602. doi: 10.1016/j.dnarep.2011.03.007. Epub 2011 May 12.

PMID:
21570366
[PubMed - indexed for MEDLINE]
11.

Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.

Thomassen GO, Weel-Sneve R, Rowe AD, Booth JA, Lindvall JM, Lagesen K, Kristiansen KI, Bjørås M, Rognes T.

PLoS One. 2010 Dec 23;5(12):e15356. doi: 10.1371/journal.pone.0015356.

PMID:
21203457
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Schizosaccharomyces pombe encodes a mutated AP endonuclease 1.

Laerdahl JK, Korvald H, Nilsen L, Dahl-Michelsen K, Rognes T, Bjørås M, Alseth I.

DNA Repair (Amst). 2011 Mar 7;10(3):296-305. doi: 10.1016/j.dnarep.2010.11.014. Epub 2010 Dec 28.

PMID:
21193357
[PubMed - indexed for MEDLINE]
13.

Continuous and periodic expansion of CAG repeats in Huntington's disease R6/1 mice.

Møllersen L, Rowe AD, Larsen E, Rognes T, Klungland A.

PLoS Genet. 2010 Dec 9;6(12):e1001242. doi: 10.1371/journal.pgen.1001242.

PMID:
21170307
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects.

Nordstrand LM, Svärd J, Larsen E, Nilsen A, Ougland R, Furu K, Lien GF, Rognes T, Namekawa SH, Lee JT, Klungland A.

PLoS One. 2010 Nov 3;5(11):e13827. doi: 10.1371/journal.pone.0013827.

PMID:
21072209
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways.

Fensgård Ø, Kassahun H, Bombik I, Rognes T, Lindvall JM, Nilsen H.

Aging (Albany NY). 2010 Mar 31;2(3):133-59.

PMID:
20382984
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts.

Nakken S, Rognes T, Hovig E.

Nucleic Acids Res. 2009 Sep;37(17):5749-56. doi: 10.1093/nar/gkp590. Epub 2009 Jul 17.

PMID:
19617376
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

PLoS One. 2009 Jun 17;4(6):e5943. doi: 10.1371/journal.pone.0005943.

PMID:
19536279
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome dynamics in major bacterial pathogens.

Ambur OH, Davidsen T, Frye SA, Balasingham SV, Lagesen K, Rognes T, Tønjum T.

FEMS Microbiol Rev. 2009 May;33(3):453-70. Review.

PMID:
19396949
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Large-scale inference of the point mutational spectrum in human segmental duplications.

Nakken S, Rødland EA, Rognes T, Hovig E.

BMC Genomics. 2009 Jan 22;10:43. doi: 10.1186/1471-2164-10-43.

PMID:
19161616
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

DNA repair in mammalian cells: Base excision repair: the long and short of it.

Robertson AB, Klungland A, Rognes T, Leiros I.

Cell Mol Life Sci. 2009 Mar;66(6):981-93. doi: 10.1007/s00018-009-8736-z. Review.

PMID:
19153658
[PubMed - indexed for MEDLINE]

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