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Items: 1 to 20 of 46

1.

cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data.

Samarakoon PS, Sorte HS, Stray-Pedersen A, Rødningen OK, Rognes T, Lyle R.

BMC Genomics. 2016 Jan 14;17:51. doi: 10.1186/s12864-016-2374-2.

2.

Swarm v2: highly-scalable and high-resolution amplicon clustering.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2015 Dec 10;3:e1420. doi: 10.7717/peerj.1420. eCollection 2015.

3.

Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway.

Yang M, Lin X, Rowe A, Rognes T, Eide L, Bjørås M.

Sci Rep. 2015 Nov 30;5:17409. doi: 10.1038/srep17409.

4.

Non-homologous functions of the AlkB homologs.

Ougland R, Rognes T, Klungland A, Larsen E.

J Mol Cell Biol. 2015 Dec;7(6):494-504. doi: 10.1093/jmcb/mjv029. Epub 2015 May 23. Review.

5.

Swarm: robust and fast clustering method for amplicon-based studies.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2014 Sep 25;2:e593. doi: 10.7717/peerj.593. eCollection 2014.

6.

Normalization of RNA-sequencing data from samples with varying mRNA levels.

Aanes H, Winata C, Moen LF, Østrup O, Mathavan S, Collas P, Rognes T, Aleström P.

PLoS One. 2014 Feb 25;9(2):e89158. doi: 10.1371/journal.pone.0089158. eCollection 2014.

7.

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response.

Booth JA, Thomassen GO, Rowe AD, Weel-Sneve R, Lagesen K, Kristiansen KI, Bjørås M, Rognes T, Lindvall JM.

Sci Rep. 2013 Oct 25;3:3053. doi: 10.1038/srep03053.

8.

A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures.

Backe PH, Simm R, Laerdahl JK, Dalhus B, Fagerlund A, Okstad OA, Rognes T, Alseth I, Kolstø AB, Bjørås M.

J Struct Biol. 2013 Jul;183(1):66-75. doi: 10.1016/j.jsb.2013.04.007. Epub 2013 Apr 25.

9.

Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits.

Søberg K, Jahnsen T, Rognes T, Skålhegg BS, Laerdahl JK.

PLoS One. 2013 Apr 12;8(4):e60935. doi: 10.1371/journal.pone.0060935. Print 2013.

10.

Single transmembrane peptide DinQ modulates membrane-dependent activities.

Weel-Sneve R, Kristiansen KI, Odsbu I, Dalhus B, Booth J, Rognes T, Skarstad K, Bjørås M.

PLoS Genet. 2013;9(2):e1003260. doi: 10.1371/journal.pgen.1003260. Epub 2013 Feb 7.

11.

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes.

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A.

Nucleic Acids Res. 2012 Nov;40(21):10950-63. doi: 10.1093/nar/gks839. Epub 2012 Sep 10.

12.

ALKBH1 is a histone H2A dioxygenase involved in neural differentiation.

Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E.

Stem Cells. 2012 Dec;30(12):2672-82. doi: 10.1002/stem.1228.

13.

Identification and characterization of novel mutations in the human gene encoding the catalytic subunit Calpha of protein kinase A (PKA).

Søberg K, Larsen AC, Diskar M, Backe PH, Bjørås M, Jahnsen T, Laerdahl JK, Rognes T, Herberg FW, Skålhegg BS.

PLoS One. 2012;7(4):e34838. doi: 10.1371/journal.pone.0034838. Epub 2012 Apr 13.

14.

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.

Rognes T.

BMC Bioinformatics. 2011 Jun 1;12:221. doi: 10.1186/1471-2105-12-221.

15.

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage.

Yang M, Aamodt RM, Dalhus B, Balasingham S, Helle I, Andersen P, Tønjum T, Alseth I, Rognes T, Bjørås M.

DNA Repair (Amst). 2011 Jun 10;10(6):595-602. doi: 10.1016/j.dnarep.2011.03.007. Epub 2011 May 12.

PMID:
21570366
16.

Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.

Thomassen GO, Weel-Sneve R, Rowe AD, Booth JA, Lindvall JM, Lagesen K, Kristiansen KI, Bjørås M, Rognes T.

PLoS One. 2010 Dec 23;5(12):e15356. doi: 10.1371/journal.pone.0015356.

17.

Schizosaccharomyces pombe encodes a mutated AP endonuclease 1.

Laerdahl JK, Korvald H, Nilsen L, Dahl-Michelsen K, Rognes T, Bjørås M, Alseth I.

DNA Repair (Amst). 2011 Mar 7;10(3):296-305. doi: 10.1016/j.dnarep.2010.11.014. Epub 2010 Dec 28.

PMID:
21193357
18.

Continuous and periodic expansion of CAG repeats in Huntington's disease R6/1 mice.

Møllersen L, Rowe AD, Larsen E, Rognes T, Klungland A.

PLoS Genet. 2010 Dec 9;6(12):e1001242. doi: 10.1371/journal.pgen.1001242.

19.

Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects.

Nordstrand LM, Svärd J, Larsen E, Nilsen A, Ougland R, Furu K, Lien GF, Rognes T, Namekawa SH, Lee JT, Klungland A.

PLoS One. 2010 Nov 3;5(11):e13827. doi: 10.1371/journal.pone.0013827.

20.

A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways.

Fensgård Ø, Kassahun H, Bombik I, Rognes T, Lindvall JM, Nilsen H.

Aging (Albany NY). 2010 Mar 31;2(3):133-59.

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