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Results: 1 to 20 of 221

1.

Arhodomonas sp. strain Seminole and its genetic potential to degrade aromatic compounds under high-salinity conditions.

Dalvi S, Nicholson C, Najar F, Roe BA, Canaan P, Hartson SD, Fathepure BZ.

Appl Environ Microbiol. 2014 Nov;80(21):6664-76. doi: 10.1128/AEM.01509-14. Epub 2014 Aug 22.

2.

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress.

Gust KA, Najar FZ, Habib T, Lotufo GR, Piggot AM, Fouke BW, Laird JG, Wilbanks MS, Rawat A, Indest KJ, Roe BA, Perkins EJ.

BMC Genomics. 2014 Jul 12;15:591. doi: 10.1186/1471-2164-15-591.

3.

Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.

Shearer LA, Anderson LK, de Jong H, Smit S, Goicoechea JL, Roe BA, Hua A, Giovannoni JJ, Stack SM.

G3 (Bethesda). 2014 May 30;4(8):1395-405. doi: 10.1534/g3.114.011197.

4.

Frederick Sanger (1918–2013).

Roe BA.

Genome Res. 2014 Apr;24(4):xi-xii. No abstract available.

5.

BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in upland cotton.

Buyyarapu R, Kantety RV, Yu JZ, Xu Z, Kohel RJ, Percy RG, Macmil S, Wiley GB, Roe BA, Sharma GC.

PLoS One. 2013 Oct 8;8(10):e76757. doi: 10.1371/journal.pone.0076757. eCollection 2013.

6.

Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem.

Jones AC, Liao TS, Najar FZ, Roe BA, Hambright KD, Caron DA.

Environ Microbiol. 2013 Sep;15(9):2557-72. doi: 10.1111/1462-2920.12151. Epub 2013 Jun 10.

PMID:
23750973
7.

Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.

Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O'Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z.

PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323. Epub 2013 Feb 28.

8.

The tomato genome sequence provides insights into fleshy fruit evolution.

Tomato Genome Consortium.

Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119.

9.

Detection of members of the Secoviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.

Thapa V, Melcher U, Wiley GB, Doust A, Palmer MW, Roewe K, Roe BA, Shen G, Roossinck MJ, Wang YM, Kamath N.

Virus Res. 2012 Jul;167(1):34-42. doi: 10.1016/j.virusres.2012.03.016. Epub 2012 Apr 2.

PMID:
22487310
10.

Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine.

Ashfield T, Egan AN, Pfeil BE, Chen NW, Podicheti R, Ratnaparkhe MB, Ameline-Torregrosa C, Denny R, Cannon S, Doyle JJ, Geffroy V, Roe BA, Saghai Maroof MA, Young ND, Innes RW.

Plant Physiol. 2012 May;159(1):336-54. doi: 10.1104/pp.112.195040. Epub 2012 Mar 28.

11.

Elevated carbon dioxide alters the structure of soil microbial communities.

Deng Y, He Z, Xu M, Qin Y, Van Nostrand JD, Wu L, Roe BA, Wiley G, Hobbie SE, Reich PB, Zhou J.

Appl Environ Microbiol. 2012 Apr;78(8):2991-5. doi: 10.1128/AEM.06924-11. Epub 2012 Feb 3.

12.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

13.

Molecular characterization, ecology, and epidemiology of a novel Tymovirus in Asclepias viridis from Oklahoma.

Min BE, Feldman TS, Ali A, Wiley G, Muthukumar V, Roe BA, Roossinck M, Melcher U, Palmer MW, Nelson RS.

Phytopathology. 2012 Feb;102(2):166-76. doi: 10.1094/PHYTO-05-11-0154.

14.

Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA.

Scheets K, Blinkova O, Melcher U, Palmer MW, Wiley GB, Ding T, Roe BA.

Virus Res. 2011 Sep;160(1-2):256-63. doi: 10.1016/j.virusres.2011.06.023. Epub 2011 Jul 6.

PMID:
21762736
15.

Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization.

Fabich AJ, Leatham MP, Grissom JE, Wiley G, Lai H, Najar F, Roe BA, Cohen PS, Conway T.

Infect Immun. 2011 Jun;79(6):2430-9. doi: 10.1128/IAI.01199-10. Epub 2011 Mar 21.

16.

Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing.

Choi JH, Li Y, Guo J, Pei L, Rauch TA, Kramer RS, Macmil SL, Wiley GB, Bennett LB, Schnabel JL, Taylor KH, Kim S, Xu D, Sreekumar A, Pfeifer GP, Roe BA, Caldwell CW, Bhalla KN, Shi H.

PLoS One. 2010 Sep 29;5(9). pii: e13020. doi: 10.1371/journal.pone.0013020. Erratum in: PLoS One. 2011;6(2). doi: 10.1371/annotation/ef58e5ee-1aaf-47b8-a0c5-1f1bf6886a8c.

17.

Rumen microbial population dynamics during adaptation to a high-grain diet.

Fernando SC, Purvis HT 2nd, Najar FZ, Sukharnikov LO, Krehbiel CR, Nagaraja TG, Roe BA, Desilva U.

Appl Environ Microbiol. 2010 Nov;76(22):7482-90. doi: 10.1128/AEM.00388-10. Epub 2010 Sep 17.

18.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107. Epub 2010 Jun 14.

19.

Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae.

Ramsey JS, Rider DS, Walsh TK, De Vos M, Gordon KH, Ponnala L, Macmil SL, Roe BA, Jander G.

Insect Mol Biol. 2010 Mar;19 Suppl 2:155-64. doi: 10.1111/j.1365-2583.2009.00973.x.

PMID:
20482647
20.

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology.

Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA.

Mol Ecol. 2010 Mar;19 Suppl 1:81-8. doi: 10.1111/j.1365-294X.2009.04470.x.

PMID:
20331772
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