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Results: 1 to 20 of 54

1.

Accurate assignment of significance to neuropeptide identifications using monte carlo k-permuted decoy databases.

Akhtar MN, Southey BR, Andrén PE, Sweedler JV, Rodriguez-Zas SL.

PLoS One. 2014 Oct 17;9(10):e111112. doi: 10.1371/journal.pone.0111112. eCollection 2014.

PMID:
25329667
[PubMed - in process]
Free PMC Article
2.

Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.

Shahzad K, Bionaz M, Trevisi E, Bertoni G, Rodriguez-Zas SL, Loor JJ.

PLoS One. 2014 Jun 10;9(6):e99757. doi: 10.1371/journal.pone.0099757. eCollection 2014.

PMID:
24914544
[PubMed - in process]
Free PMC Article
3.

Postpartal subclinical endometritis alters transcriptome profiles in liver and adipose tissue of dairy cows.

Akbar H, Cardoso FC, Meier S, Burke C, McDougall S, Mitchell M, Walker C, Rodriguez-Zas SL, Everts RE, Lewin HA, Roche JR, Loor JJ.

Bioinform Biol Insights. 2014 Feb 19;8:45-63. doi: 10.4137/BBI.S13735. eCollection 2014.

PMID:
24578603
[PubMed]
Free PMC Article
4.

Bivariate genome-wide association analysis of the growth and intake components of feed efficiency.

Serão NV, González-Peña D, Beever JE, Bollero GA, Southey BR, Faulkner DB, Rodriguez-Zas SL.

PLoS One. 2013 Oct 29;8(10):e78530. doi: 10.1371/journal.pone.0078530. eCollection 2013.

PMID:
24205251
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle.

Serão NV, González-Peña D, Beever JE, Faulkner DB, Southey BR, Rodriguez-Zas SL.

BMC Genet. 2013 Sep 25;14:94. doi: 10.1186/1471-2156-14-94.

PMID:
24066663
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Multifactorial Understanding of Ion Abundance in Tandem Mass Spectrometry Experiments.

Fazal Z, Southey BR, Sweedler JV, Rodriguez-Zas SL.

J Proteomics Bioinform. 2013 Jan 29;6(2):23-29.

PMID:
24031159
[PubMed]
Free PMC Article
7.

Bioinformatics analysis of transcriptome dynamics during growth in angus cattle longissimus muscle.

Moisá SJ, Shike DW, Graugnard DE, Rodriguez-Zas SL, Everts RE, Lewin HA, Faulkner DB, Berger LL, Loor JJ.

Bioinform Biol Insights. 2013 Aug 4;7:253-70. doi: 10.4137/BBI.S12328. eCollection 2013.

PMID:
23943656
[PubMed]
Free PMC Article
8.

Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation.

Zhao W, Shahzad K, Jiang M, Graugnard DE, Rodriguez-Zas SL, Luo J, Loor JJ, Hurley WL.

Bioinform Biol Insights. 2013 Jul 14;7:193-216. doi: 10.4137/BBI.S12205. Print 2013.

PMID:
23908586
[PubMed]
Free PMC Article
9.

Trans-10, cis 12-Conjugated Linoleic Acid-Induced Milk Fat Depression Is Associated with Inhibition of PPARγ Signaling and Inflammation in Murine Mammary Tissue.

Kadegowda AK, Khan MJ, Piperova LS, Teter BB, Rodriguez-Zas SL, Erdman RA, Loor JJ.

J Lipids. 2013;2013:890343. doi: 10.1155/2013/890343. Epub 2013 May 14.

PMID:
23762566
[PubMed]
Free PMC Article
10.

Transcription factor-microRNA-target gene networks associated with ovarian cancer survival and recurrence.

Delfino KR, Rodriguez-Zas SL.

PLoS One. 2013;8(3):e58608. doi: 10.1371/journal.pone.0058608. Epub 2013 Mar 12.

PMID:
23554906
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Aging leads to prolonged duration of inflammation-induced depression-like behavior caused by Bacillus Calmette-Guérin.

Kelley KW, O'Connor JC, Lawson MA, Dantzer R, Rodriguez-Zas SL, McCusker RH.

Brain Behav Immun. 2013 Aug;32:63-9. doi: 10.1016/j.bbi.2013.02.003. Epub 2013 Feb 26.

PMID:
23454036
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification and characterization of alternative exon usage linked glioblastoma multiforme survival.

Sadeque A, Serão NV, Southey BR, Delfino KR, Rodriguez-Zas SL.

BMC Med Genomics. 2012 Dec 4;5:59. doi: 10.1186/1755-8794-5-59.

PMID:
23206951
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

First survey and functional annotation of prohormone and convertase genes in the pig.

Porter KI, Southey BR, Sweedler JV, Rodriguez-Zas SL.

BMC Genomics. 2012 Nov 15;13:582. doi: 10.1186/1471-2164-13-582.

PMID:
23153308
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Analyses of pig genomes provide insight into porcine demography and evolution.

Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB.

Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622.

PMID:
23151582
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments.

Akhtar MN, Southey BR, Andrén PE, Sweedler JV, Rodriguez-Zas SL.

J Proteome Res. 2012 Dec 7;11(12):6044-55. doi: 10.1021/pr3007123. Epub 2012 Nov 6.

PMID:
23082934
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior.

Ament SA, Blatti CA, Alaux C, Wheeler MM, Toth AL, Le Conte Y, Hunt GJ, Guzmán-Novoa E, Degrandi-Hoffman G, Uribe-Rubio JL, Amdam GV, Page RE Jr, Rodriguez-Zas SL, Robinson GE, Sinha S.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1801-10. doi: 10.1073/pnas.1205283109. Epub 2012 Jun 12.

PMID:
22691501
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression.

Ament SA, Wang Y, Chen CC, Blatti CA, Hong F, Liang ZS, Negre N, White KP, Rodriguez-Zas SL, Mizzen CA, Sinha S, Zhong S, Robinson GE.

PLoS Genet. 2012;8(3):e1002596. doi: 10.1371/journal.pgen.1002596. Epub 2012 Mar 29.

PMID:
22479195
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: validation using the bovine mammary transcriptome.

Bionaz M, Periasamy K, Rodriguez-Zas SL, Hurley WL, Loor JJ.

PLoS One. 2012;7(3):e32455. doi: 10.1371/journal.pone.0032455. Epub 2012 Mar 16.

PMID:
22438877
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle.

Bionaz M, Periasamy K, Rodriguez-Zas SL, Everts RE, Lewin HA, Hurley WL, Loor JJ.

PLoS One. 2012;7(3):e33268. doi: 10.1371/journal.pone.0033268. Epub 2012 Mar 12.

PMID:
22428004
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.

Monaco E, Bionaz M, Rodriguez-Zas S, Hurley WL, Wheeler MB.

PLoS One. 2012;7(3):e32481. doi: 10.1371/journal.pone.0032481. Epub 2012 Mar 7.

PMID:
22412878
[PubMed - indexed for MEDLINE]
Free PMC Article

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