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Results: 6

1.

Extraction of human kinase mutations from literature, databases and genotyping studies.

Krallinger M, Izarzugaza JM, Rodriguez-Penagos C, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S1. doi: 10.1186/1471-2105-10-S8-S1.

2.

PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.

Krallinger M, Rodriguez-Penagos C, Tendulkar A, Valencia A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W160-5. doi: 10.1093/nar/gkp484. Epub 2009 Jun 11.

3.

Introducing meta-services for biomedical information extraction.

Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S6. doi: 10.1186/gb-2008-9-s2-s6. Epub 2008 Sep 1.

4.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

5.

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, Merino E, Huerta AM, Treviño-Quintanilla L, Collado-Vides J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D120-4. Epub 2007 Dec 23.

6.

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing.

Rodríguez-Penagos C, Salgado H, Martínez-Flores I, Collado-Vides J.

BMC Bioinformatics. 2007 Aug 7;8:293.

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