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Results: 1 to 20 of 57

1.

Frequency-dependent selection drives HBeAg seroconversion in chronic hepatitis B virus infection.

Warner BG, Abbott WG, Rodrigo AG.

Evol Med Public Health. 2014 Jan;2014(1):1-9. doi: 10.1093/emph/eot023. Epub 2013 Dec 13.

PMID:
24481244
[PubMed]
Free PMC Article
2.

HIV-1 transmission during early antiretroviral therapy: evaluation of two HIV-1 transmission events in the HPTN 052 prevention study.

Ping LH, Jabara CB, Rodrigo AG, Hudelson SE, Piwowar-Manning E, Wang L, Eshleman SH, Cohen MS, Swanstrom R.

PLoS One. 2013 Sep 24;8(9):e71557. doi: 10.1371/journal.pone.0071557. eCollection 2013.

PMID:
24086252
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Transient compartmentalization of simian immunodeficiency virus variants in the breast milk of african green monkeys.

Ho C, Wu S, Amos JD, Colvin L, Smith SD, Wilks AB, Demarco CT, Brinkley C, Denny TN, Schmitz JE, Rodrigo AG, Permar SR.

J Virol. 2013 Oct;87(20):11292-9. doi: 10.1128/JVI.01643-13. Epub 2013 Aug 7.

PMID:
23926337
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels.

Wu SH, Black MA, North RA, Rodrigo AG.

BMC Bioinformatics. 2012 Jun 19;13:137. doi: 10.1186/1471-2105-13-137.

PMID:
22712439
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Time-dependent rates of molecular evolution.

Ho SY, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper A.

Mol Ecol. 2011 Aug;20(15):3087-101. doi: 10.1111/j.1365-294X.2011.05178.x. Epub 2011 Jul 8. Review.

PMID:
21740474
[PubMed - indexed for MEDLINE]
6.

Evidence for reduced selection pressure on the hepatitis B virus core gene in hepatitis B e antigen-negative chronic hepatitis B.

Warner BG, Tsai P, Rodrigo AG, 'ofanoa M, Gane EJ, Munn SR, Abbott WG.

J Gen Virol. 2011 Aug;92(Pt 8):1800-8. doi: 10.1099/vir.0.030478-0. Epub 2011 Apr 20.

PMID:
21508187
[PubMed - indexed for MEDLINE]
Free Article
7.

The distribution of feline immunodeficiency virus in tissue compartments of feral domestic cats.

Hayward JJ, Rodrigo AG.

Arch Virol. 2010 Mar;155(3):411-6. doi: 10.1007/s00705-010-0598-z. Epub 2010 Jan 29. No abstract available.

PMID:
20112119
[PubMed - indexed for MEDLINE]
8.

Covariation of branch lengths in phylogenies of functionally related genes.

Li WL, Rodrigo AG.

PLoS One. 2009 Dec 29;4(12):e8487. doi: 10.1371/journal.pone.0008487.

PMID:
20041191
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Molecular epidemiology of feline immunodeficiency virus in the domestic cat (Felis catus).

Hayward JJ, Rodrigo AG.

Vet Immunol Immunopathol. 2010 Mar 15;134(1-2):68-74. doi: 10.1016/j.vetimm.2009.10.011. Epub 2009 Oct 14. Review.

PMID:
19896220
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Associations between HLA class I alleles and escape mutations in the hepatitis B virus core gene in New Zealand-resident Tongans.

Abbott WG, Tsai P, Leung E, Trevarton A, Ofanoa M, Hornell J, Gane EJ, Munn SR, Rodrigo AG.

J Virol. 2010 Jan;84(1):621-9. doi: 10.1128/JVI.01471-09. Epub .

PMID:
19846510
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

A statistical model to identify differentially expressed proteins in 2D PAGE gels.

Wu SH, Black MA, North RA, Atkinson KR, Rodrigo AG.

PLoS Comput Biol. 2009 Sep;5(9):e1000509. doi: 10.1371/journal.pcbi.1000509. Epub 2009 Sep 18.

PMID:
19763172
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Selecting taxa to save or sequence: desirable criteria and a greedy solution.

Bordewich M, Rodrigo AG, Semple C.

Syst Biol. 2008 Dec;57(6):825-34. doi: 10.1080/10635150802552831.

PMID:
19085326
[PubMed - indexed for MEDLINE]
14.

Recombination in feline immunodeficiency virus from feral and companion domestic cats.

Hayward JJ, Rodrigo AG.

Virol J. 2008 Jun 17;5:76. doi: 10.1186/1743-422X-5-76.

PMID:
18559113
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences.

Goode M, Rodrigo AG.

Curr Protoc Bioinformatics. 2004 May;Chapter 6:Unit 6.8. doi: 10.1002/0471250953.bi0608s05.

PMID:
18428729
[PubMed - indexed for MEDLINE]
16.

Viral quasi-species evolution during hepatitis Be antigen seroconversion.

Lim SG, Cheng Y, Guindon S, Seet BL, Lee LY, Hu P, Wasser S, Peter FJ, Tan T, Goode M, Rodrigo AG.

Gastroenterology. 2007 Sep;133(3):951-8. Epub 2007 Jun 20.

PMID:
17854598
[PubMed - indexed for MEDLINE]
17.

SQUINT: a multiple alignment program and editor.

Goode MG, Rodrigo AG.

Bioinformatics. 2007 Jun 15;23(12):1553-5. Epub 2007 May 7.

PMID:
17485434
[PubMed - indexed for MEDLINE]
Free Article
18.

Phylogenetic analysis of feline immunodeficiency virus in feral and companion domestic cats of New Zealand.

Hayward JJ, Taylor J, Rodrigo AG.

J Virol. 2007 Mar;81(6):2999-3004. Epub 2006 Dec 27.

PMID:
17192306
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes.

Ross HA, Nickle DC, Liu Y, Heath L, Jensen MA, Rodrigo AG, Mullins JI.

Evol Bioinform Online. 2007 Jan 13;2:53-76.

PMID:
19455202
[PubMed]
Free PMC Article
20.

Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope.

Doria-Rose NA, Learn GH, Rodrigo AG, Nickle DC, Li F, Mahalanabis M, Hensel MT, McLaughlin S, Edmonson PF, Montefiori D, Barnett SW, Haigwood NL, Mullins JI.

J Virol. 2005 Sep;79(17):11214-24.

PMID:
16103173
[PubMed - indexed for MEDLINE]
Free PMC Article
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