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Items: 1 to 20 of 99

1.

Cpe1786/IscR of Clostridium perfringens represses expression of genes involved in Fe-S cluster biogenesis.

André G, Haudecoeur E, Courtois E, Monot M, Dupuy B, Rodionov DA, Martin-Verstraete I.

Res Microbiol. 2016 Mar 26. pii: S0923-2508(16)00049-8. doi: 10.1016/j.resmic.2016.03.002. [Epub ahead of print]

PMID:
27020244
2.

Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children.

Blanton LV, Charbonneau MR, Salih T, Barratt MJ, Venkatesh S, Ilkaveya O, Subramanian S, Manary MJ, Trehan I, Jorgensen JM, Fan YM, Henrissat B, Leyn SA, Rodionov DA, Osterman AL, Maleta KM, Newgard CB, Ashorn P, Dewey KG, Gordon JI.

Science. 2016 Feb 19;351(6275). pii: aad3311. doi: 10.1126/science.aad3311.

PMID:
26912898
3.

Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus.

Khoroshkin MS, Leyn SA, Van Sinderen D, Rodionov DA.

Front Microbiol. 2016 Feb 9;7:120. doi: 10.3389/fmicb.2016.00120. eCollection 2016.

4.

Two novel regulators of N-acetyl-galactosamine utilization pathway and distinct roles in bacterial infections.

Zhang H, Ravcheev DA, Hu D, Zhang F, Gong X, Hao L, Cao M, Rodionov DA, Wang C, Feng Y.

Microbiologyopen. 2015 Dec;4(6):983-1000. doi: 10.1002/mbo3.307. Epub 2015 Nov 5.

5.

A novel transcriptional regulator of L-arabinose utilization in human gut bacteria.

Chang C, Tesar C, Li X, Kim Y, Rodionov DA, Joachimiak A.

Nucleic Acids Res. 2015 Dec 2;43(21):10546-59. doi: 10.1093/nar/gkv1005. Epub 2015 Oct 4.

6.

Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides.

Wu M, McNulty NP, Rodionov DA, Khoroshkin MS, Griffin NW, Cheng J, Latreille P, Kerstetter RA, Terrapon N, Henrissat B, Osterman AL, Gordon JI.

Science. 2015 Oct 2;350(6256):aac5992. doi: 10.1126/science.aac5992.

7.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota.

Leyn SA, Rodionova IA, Li X, Rodionov DA.

J Bacteriol. 2015 Jul;197(14):2383-91. doi: 10.1128/JB.00249-15. Epub 2015 May 4.

8.

Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.

Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC.

Biochemistry. 2015 Jan 27;54(3):909-31. doi: 10.1021/bi501388y. Epub 2015 Jan 16.

9.

Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria.

Leyn SA, Suvorova IA, Kholina TD, Sherstneva SS, Novichkov PS, Gelfand MS, Rodionov DA.

PLoS One. 2014 Nov 20;9(11):e113714. doi: 10.1371/journal.pone.0113714. eCollection 2014.

10.

Comparative genomics of DtxR family regulons for metal homeostasis in Archaea.

Leyn SA, Rodionov DA.

J Bacteriol. 2015 Feb;197(3):451-8. doi: 10.1128/JB.02386-14. Epub 2014 Nov 17.

11.

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.

Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA.

Environ Microbiol Rep. 2015 Apr;7(2):204-10. doi: 10.1111/1758-2229.12227. Epub 2014 Dec 17.

PMID:
25345570
12.

Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.

Christensen GA, Zane GM, Kazakov AE, Li X, Rodionov DA, Novichkov PS, Dubchak I, Arkin AP, Wall JD.

J Bacteriol. 2015 Jan 1;197(1):29-39. doi: 10.1128/JB.02083-14. Epub 2014 Oct 13.

13.

Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.

Zhang L, Nie X, Ravcheev DA, Rodionov DA, Sheng J, Gu Y, Yang S, Jiang W, Yang C.

J Bacteriol. 2014 Nov;196(22):3949-63. doi: 10.1128/JB.02037-14. Epub 2014 Sep 2.

14.

Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.

Heinken A, Khan MT, Paglia G, Rodionov DA, Harmsen HJ, Thiele I.

J Bacteriol. 2014 Sep;196(18):3289-302. doi: 10.1128/JB.01780-14. Epub 2014 Jul 7.

15.

Transport of magnesium by a bacterial Nramp-related gene.

Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.

PLoS Genet. 2014 Jun 26;10(6):e1004429. doi: 10.1371/journal.pgen.1004429. eCollection 2014 Jun.

16.

Comparative genomics and evolution of regulons of the LacI-family transcription factors.

Ravcheev DA, Khoroshkin MS, Laikova ON, Tsoy OV, Sernova NV, Petrova SA, Rakhmaninova AB, Novichkov PS, Gelfand MS, Rodionov DA.

Front Microbiol. 2014 Jun 11;5:294. doi: 10.3389/fmicb.2014.00294. eCollection 2014.

17.

Computational analysis of riboswitch-based regulation.

Sun EI, Rodionov DA.

Biochim Biophys Acta. 2014 Oct;1839(10):900-907. doi: 10.1016/j.bbagrm.2014.02.011. Epub 2014 Feb 28. Review.

18.

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.

Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA.

Front Microbiol. 2013 Dec 23;4:407. doi: 10.3389/fmicb.2013.00407. eCollection 2013.

19.

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.

Ravcheev DA, Godzik A, Osterman AL, Rodionov DA.

BMC Genomics. 2013 Dec 12;14:873. doi: 10.1186/1471-2164-14-873.

20.

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.

Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin RA, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA.

BMC Genomics. 2013 Nov 1;14:745. doi: 10.1186/1471-2164-14-745.

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