Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 74

1.

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.

Bertelli C, Aeby S, Chassot B, Clulow J, Hilfiker O, Rappo S, Ritzmann S, Schumacher P, Terrettaz C, Benaglio P, Falquet L, Farinelli L, Gharib WH, Goesmann A, Harshman K, Linke B, Miyazaki R, Rivolta C, Robinson-Rechavi M, van der Meer JR, Greub G.

Front Microbiol. 2015 Feb 19;6:101. doi: 10.3389/fmicb.2015.00101. eCollection 2015.

2.

Big data and other challenges in the quest for orthologs.

Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium.

Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26.

3.

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, Robinson-Rechavi M, Sereno PC, Mungall CJ.

J Biomed Semantics. 2014 May 19;5:21. doi: 10.1186/2041-1480-5-21. eCollection 2014.

4.

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR.

Environ Microbiol. 2015 Jan;17(1):91-104. doi: 10.1111/1462-2920.12498. Epub 2014 May 28.

PMID:
24803113
5.

Patterns of positive selection in seven ant genomes.

Roux J, Privman E, Moretti S, Daub JT, Robinson-Rechavi M, Keller L.

Mol Biol Evol. 2014 Jul;31(7):1661-85. doi: 10.1093/molbev/msu141. Epub 2014 Apr 29.

6.

IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.

Rosikiewicz M, Robinson-Rechavi M.

Bioinformatics. 2014 May 15;30(10):1392-9. doi: 10.1093/bioinformatics/btu027. Epub 2014 Jan 21.

7.

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Valle M, Schabauer H, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Salamin N.

Bioinformatics. 2014 Jan 23. [Epub ahead of print]

8.

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration.

Gaudet P, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C.

Database (Oxford). 2013 Dec 6;2013:bat077. doi: 10.1093/database/bat077. Print 2013. No abstract available.

9.

Selectome update: quality control and computational improvements to a database of positive selection.

Moretti S, Laurenczy B, Gharib WH, Castella B, Kuzniar A, Schabauer H, Studer RA, Valle M, Salamin N, Stockinger H, Robinson-Rechavi M.

Nucleic Acids Res. 2014 Jan;42(Database issue):D917-21. doi: 10.1093/nar/gkt1065. Epub 2013 Nov 12.

10.

The hourglass and the early conservation models--co-existing patterns of developmental constraints in vertebrates.

Piasecka B, Lichocki P, Moretti S, Bergmann S, Robinson-Rechavi M.

PLoS Genet. 2013 Apr;9(4):e1003476. doi: 10.1371/journal.pgen.1003476. Epub 2013 Apr 25.

11.

Evidence for polygenic adaptation to pathogens in the human genome.

Daub JT, Hofer T, Cutivet E, Dupanloup I, Quintana-Murci L, Robinson-Rechavi M, Excoffier L.

Mol Biol Evol. 2013 Jul;30(7):1544-58. doi: 10.1093/molbev/mst080. Epub 2013 Apr 26.

12.

The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC.

Gharib WH, Robinson-Rechavi M.

Mol Biol Evol. 2013 Jul;30(7):1675-86. doi: 10.1093/molbev/mst062. Epub 2013 Apr 4.

13.

Uncovering hidden duplicated content in public transcriptomics data.

Rosikiewicz M, Comte A, Niknejad A, Robinson-Rechavi M, Bastian FB.

Database (Oxford). 2013 Mar 13;2013:bat010. doi: 10.1093/database/bat010. Print 2013.

14.

Community-wide plasmid gene mobilization and selection.

Sentchilo V, Mayer AP, Guy L, Miyazaki R, Green Tringe S, Barry K, Malfatti S, Goessmann A, Robinson-Rechavi M, van der Meer JR.

ISME J. 2013 Jun;7(6):1173-86. doi: 10.1038/ismej.2013.13. Epub 2013 Feb 14.

15.

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.

Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, Natale D, O'Donovan C, Ouellette F, Pruitt KD, Robinson-Rechavi M, Sansone SA, Schofield P, Sutton G, Van Auken K, Vasudevan S, Wu C, Young J, Mazumder R.

Database (Oxford). 2012 Oct 29;2012:bas036. doi: 10.1093/database/bas036. Print 2012.

16.

gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution.

Moretti S, Murri R, Maffioletti S, Kuzniar A, Castella B, Salamin N, Robinson-Rechavi M, Stockinger H.

Stud Health Technol Inform. 2012;175:59-68.

PMID:
22941988
17.

Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs.

Altenhoff AM, Studer RA, Robinson-Rechavi M, Dessimoz C.

PLoS Comput Biol. 2012;8(5):e1002514. doi: 10.1371/journal.pcbi.1002514. Epub 2012 May 17.

18.

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.

Piasecka B, Robinson-Rechavi M, Bergmann S.

Bioinformatics. 2012 Jul 15;28(14):1865-72. doi: 10.1093/bioinformatics/bts266. Epub 2012 May 9.

19.

Comparative modular analysis of gene expression in vertebrate organs.

Piasecka B, Kutalik Z, Roux J, Bergmann S, Robinson-Rechavi M.

BMC Genomics. 2012 Mar 29;13:124. doi: 10.1186/1471-2164-13-124.

20.

Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs.

Roux J, Gonzàlez-Porta M, Robinson-Rechavi M.

Nucleic Acids Res. 2012 Jul;40(13):5890-900. doi: 10.1093/nar/gks279. Epub 2012 Mar 28.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk