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Results: 1 to 20 of 155

1.

Extracting patterns of database and software usage from the bioinformatics literature.

Duck G, Nenadic G, Brass A, Robertson DL, Stevens R.

Bioinformatics. 2014 Sep 1;30(17):i601-i608. doi: 10.1093/bioinformatics/btu471.

PMID:
25161253
[PubMed - in process]
Free Article
2.

The pain interactome: Connecting pain-specific protein interactions.

Jamieson DG, Moss A, Kennedy M, Jones S, Nenadic G, Robertson DL, Sidders B.

Pain. 2014 Jun 28. pii: S0304-3959(14)00309-1. doi: 10.1016/j.pain.2014.06.020. [Epub ahead of print]

PMID:
24978826
[PubMed - as supplied by publisher]
Free Article
3.

The utility of different bioinformatics algorithms for genotypic HIV-1 tropism testing in a large clinical cohort with multiple subtypes.

Bartlett AD, Macartney MJ, Conibear TC, Feyertag F, Smith CJ, Johnson MA, Hyams C, Garcia-Diaz A, McCormick AL, Booth C, Robertson DL, Webster DP.

AIDS. 2014 Apr 30. [Epub ahead of print]

PMID:
24785955
[PubMed - as supplied by publisher]
4.

Constraints from protein structure and intra-molecular coevolution influence the fitness of HIV-1 recombinants.

Woo J, Robertson DL, Lovell SC.

Virology. 2014 Apr;454-455:34-9. doi: 10.1016/j.virol.2014.01.029. Epub 2014 Feb 22.

PMID:
24725929
[PubMed - indexed for MEDLINE]
5.

Factors associated with siman immunodeficiency virus transmission in a natural African nonhuman primate host in the wild.

Ma D, Jasinska AJ, Feyertag F, Wijewardana V, Kristoff J, He T, Raehtz K, Schmitt CA, Jung Y, Cramer JD, Dione M, Antonio M, Tracy R, Turner T, Robertson DL, Pandrea I, Freimer N, Apetrei C; International Vervet Research Consortium.

J Virol. 2014 May;88(10):5687-705. doi: 10.1128/JVI.03606-13. Epub 2014 Mar 12.

PMID:
24623416
[PubMed - indexed for MEDLINE]
6.

Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.

Gibson RM, Meyer AM, Winner D, Archer J, Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME.

Antimicrob Agents Chemother. 2014 Apr;58(4):2167-85. doi: 10.1128/AAC.02710-13. Epub 2014 Jan 27.

PMID:
24468782
[PubMed - in process]
7.

Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries.

Boissonneault KR, Henningsen BM, Bates SS, Robertson DL, Milton S, Pelletier J, Hogan DA, Housman DE.

BMC Mol Biol. 2013 Nov 1;14:25. doi: 10.1186/1471-2199-14-25.

PMID:
24180290
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

bioNerDS: exploring bioinformatics' database and software use through literature mining.

Duck G, Nenadic G, Brass A, Robertson DL, Stevens R.

BMC Bioinformatics. 2013 Jun 15;14:194. doi: 10.1186/1471-2105-14-194.

PMID:
23768135
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cataloging the biomedical world of pain through semi-automated curation of molecular interactions.

Jamieson DG, Roberts PM, Robertson DL, Sidders B, Nenadic G.

Database (Oxford). 2013 May 23;2013:bat033. doi: 10.1093/database/bat033. Print 2013.

PMID:
23707966
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Modular biological function is most effectively captured by combining molecular interaction data types.

Ames RM, Macpherson JI, Pinney JW, Lovell SC, Robertson DL.

PLoS One. 2013 May 3;8(5):e62670. doi: 10.1371/journal.pone.0062670. Print 2013.

PMID:
23658761
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The role of protein interactions in mediating essentiality and synthetic lethality.

Talavera D, Robertson DL, Lovell SC.

PLoS One. 2013 Apr 29;8(4):e62866. doi: 10.1371/journal.pone.0062866. Print 2013.

PMID:
23638160
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Alternative splicing and protein interaction data sets.

Talavera D, Robertson DL, Lovell SC.

Nat Biotechnol. 2013 Apr;31(4):292-3. doi: 10.1038/nbt.2540. No abstract available.

PMID:
23563420
[PubMed - indexed for MEDLINE]
13.

Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.

Weber J, Vazquez AC, Winner D, Gibson RM, Rhea AM, Rose JD, Wylie D, Henry K, Wright A, King K, Archer J, Poveda E, Soriano V, Robertson DL, Olivo PD, Arts EJ, Quiñones-Mateu ME.

J Clin Microbiol. 2013 May;51(5):1517-27. doi: 10.1128/JCM.00092-13. Epub 2013 Mar 13.

PMID:
23486708
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

SIVagm infection in wild African green monkeys from South Africa: epidemiology, natural history, and evolutionary considerations.

Ma D, Jasinska A, Kristoff J, Grobler JP, Turner T, Jung Y, Schmitt C, Raehtz K, Feyertag F, Martinez Sosa N, Wijewardana V, Burke DS, Robertson DL, Tracy R, Pandrea I, Freimer N, Apetrei C; International Vervet Research Consortium.

PLoS Pathog. 2013 Jan;9(1):e1003011. doi: 10.1371/journal.ppat.1003011. Epub 2013 Jan 17.

PMID:
23349627
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The origins of the evolutionary signal used to predict protein-protein interactions.

Swapna LS, Srinivasan N, Robertson DL, Lovell SC.

BMC Evol Biol. 2012 Dec 6;12:238. doi: 10.1186/1471-2148-12-238.

PMID:
23217198
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.

Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME.

PLoS One. 2012;7(11):e49602. doi: 10.1371/journal.pone.0049602. Epub 2012 Nov 14.

PMID:
23166726
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.

Jamieson DG, Gerner M, Sarafraz F, Nenadic G, Robertson DL.

Database (Oxford). 2012 Apr 23;2012:bas023. doi: 10.1093/database/bas023. Print 2012.

PMID:
22529179
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evolvability of yeast protein-protein interaction interfaces.

Talavera D, Williams SG, Norris MG, Robertson DL, Lovell SC.

J Mol Biol. 2012 Jun 22;419(5):387-96. doi: 10.1016/j.jmb.2012.03.021. Epub 2012 Apr 1.

PMID:
22472422
[PubMed - indexed for MEDLINE]
19.

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL.

BMC Bioinformatics. 2012 Mar 23;13:47. doi: 10.1186/1471-2105-13-47.

PMID:
22443413
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Defining the role of essential genes in human disease.

Dickerson JE, Zhu A, Robertson DL, Hentges KE.

PLoS One. 2011;6(11):e27368. doi: 10.1371/journal.pone.0027368. Epub 2011 Nov 11.

PMID:
22096564
[PubMed - indexed for MEDLINE]
Free PMC Article

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