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Results: 18

1.

YOC, A new strategy for pairwise alignment of collinear genomes.

Uricaru R, Michotey C, Chiapello H, Rivals E.

BMC Bioinformatics. 2015 Apr 2;16(1):111. [Epub ahead of print]

2.

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.

Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G.

BMC Genomics. 2014 Dec 13;15:1103. doi: 10.1186/1471-2164-15-1103.

3.

LoRDEC: accurate and efficient long read error correction.

Salmela L, Rivals E.

Bioinformatics. 2014 Dec 15;30(24):3506-14. doi: 10.1093/bioinformatics/btu538. Epub 2014 Aug 26.

4.

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite.

Buard J, Rivals E, Dunoyer de Segonzac D, Garres C, Caminade P, de Massy B, Boursot P.

PLoS One. 2014 Jan 13;9(1):e85021. doi: 10.1371/journal.pone.0085021. eCollection 2014.

5.

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.

Philippe N, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T.

Nucleic Acids Res. 2014 Mar;42(5):2820-32. doi: 10.1093/nar/gkt1300. Epub 2013 Dec 18.

6.

CRAC: an integrated approach to the analysis of RNA-seq reads.

Philippe N, Salson M, Commes T, Rivals E.

Genome Biol. 2013 Mar 28;14(3):R30. doi: 10.1186/gb-2013-14-3-r30.

7.

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.

Cayrou C, Coulombe P, Vigneron A, Stanojcic S, Ganier O, Peiffer I, Rivals E, Puy A, Laurent-Chabalier S, Desprat R, Méchali M.

Genome Res. 2011 Sep;21(9):1438-49. doi: 10.1101/gr.121830.111. Epub 2011 Jul 12.

8.

Querying large read collections in main memory: a versatile data structure.

Philippe N, Salson M, Lecroq T, Léonard M, Commes T, Rivals E.

BMC Bioinformatics. 2011 Jun 17;12:242. doi: 10.1186/1471-2105-12-242.

9.

An alternative approach to multiple genome comparison.

Mancheron A, Uricaru R, Rivals E.

Nucleic Acids Res. 2011 Aug;39(15):e101. doi: 10.1093/nar/gkr177. Epub 2011 Jun 6.

10.

DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach.

Leclercq S, Rivals E, Jarne P.

Genome Biol Evol. 2010 Jul 12;2:325-35. doi: 10.1093/gbe/evq023.

11.

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo).

Hernandez Mora JR, Rivals E, Mireau H, Budar F.

BMC Plant Biol. 2010 Feb 24;10:35. doi: 10.1186/1471-2229-10-35.

12.

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E.

Nucleic Acids Res. 2009 Aug;37(15):e104. doi: 10.1093/nar/gkp492. Epub 2009 Jun 16.

13.

Transcriptome annotation using tandem SAGE tags.

Rivals E, Boureux A, Lejeune M, Ottones F, Pérez OP, Tarhio J, Pierrat F, Ruffle F, Commes T, Marti J.

Nucleic Acids Res. 2007;35(17):e108. Epub 2007 Aug 20.

14.
15.

Detecting microsatellites within genomes: significant variation among algorithms.

Leclercq S, Rivals E, Jarne P.

BMC Bioinformatics. 2007 Apr 18;8:125.

16.

Formation of the Arabidopsis pentatricopeptide repeat family.

Rivals E, Bruyère C, Toffano-Nioche C, Lecharny A.

Plant Physiol. 2006 Jul;141(3):825-39.

17.

A fast and specific alignment method for minisatellite maps.

Bérard S, Nicolas F, Buard J, Gascuel O, Rivals E.

Evol Bioinform Online. 2007 Feb 22;2:303-20.

18.

Computational approaches to identify leucine zippers.

Bornberg-Bauer E, Rivals E, Vingron M.

Nucleic Acids Res. 1998 Jun 1;26(11):2740-6.

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