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Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.

Stival Sena J, Giguère I, Boyle B, Rigault P, Birol I, Zuccolo A, Ritland K, Ritland C, Bohlmann J, Jones S, Bousquet J, Mackay J.

BMC Plant Biol. 2014 Apr 16;14:95. doi: 10.1186/1471-2229-14-95.


Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.

Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ.

Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22.


The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.


Technical brief: isolation of total DNA from postmortem human eye tissues and quality comparison between iris and retina.

Wang JC, Wang A, Gao J, Cao S, Samad I, Zhang D, Ritland C, Cui JZ, Matsubara JA.

Mol Vis. 2012;18:3049-56. Epub 2012 Dec 22.


Genetical genomics identifies the genetic architecture for growth and weevil resistance in spruce.

Porth I, White R, Jaquish B, Alfaro R, Ritland C, Ritland K.

PLoS One. 2012;7(9):e44397. doi: 10.1371/journal.pone.0044397. Epub 2012 Sep 4.


Multiple mating and family structure of the western tent caterpillar, Malacosoma californicum pluviale: impact on disease resistance.

Franklin MT, Ritland CE, Myers JH, Cory JS.

PLoS One. 2012;7(5):e37472. doi: 10.1371/journal.pone.0037472. Epub 2012 May 24.


Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms.

Buschiazzo E, Ritland C, Bohlmann J, Ritland K.

BMC Evol Biol. 2012 Jan 20;12:8. doi: 10.1186/1471-2148-12-8.


Global transcriptome analysis of constitutive resistance to the white pine weevil in spruce.

Verne S, Jaquish B, White R, Ritland C, Ritland K.

Genome Biol Evol. 2011;3:851-67. doi: 10.1093/gbe/evr069. Epub 2011 Aug 17.


Genetic analysis of cabbage loopers, Trichoplusia ni (Lepidoptera: Noctuidae), a seasonal migrant in western North America.

Franklin MT, Ritland CE, Myers JH.

Evol Appl. 2011 Jan;4(1):89-99. doi: 10.1111/j.1752-4571.2010.00135.x. Epub 2010 Jun 8.


Spatial and temporal changes in genetic structure of greenhouse and field populations of cabbage looper, Trichoplusia ni.

Franklin MT, Ritland CE, Myers JH.

Mol Ecol. 2010 Mar;19(6):1122-33. doi: 10.1111/j.1365-294X.2010.04548.x. Epub 2010 Feb 15.


Characterization of microsatellite loci in the fungus, Grosmannia clavigera, a pine pathogen associated with the mountain pine beetle.

Tsui CK, Feau N, Ritland CE, Massoumi Alamouti S, Diguistini S, Khadempour L, Bohlmann J, Breuil C, Hamelin RC.

Mol Ecol Resour. 2009 Nov;9(6):1500-3. doi: 10.1111/j.1755-0998.2009.02717.x. Epub 2009 May 5.


Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome.

Hamberger B, Hall D, Yuen M, Oddy C, Hamberger B, Keeling CI, Ritland C, Ritland K, Bohlmann J.

BMC Plant Biol. 2009 Aug 6;9:106. doi: 10.1186/1471-2229-9-106.


Development of 10 polymorphic microsatellite loci isolated from the mountain beaver, Aplodontia rufa rufa (Rafinesque).

Piaggio AJ, Neubaum MA, Yueh H, Ritland CE, Johnston JJ, Perkins SL.

Mol Ecol Resour. 2009 Jan;9(1):323-5. doi: 10.1111/j.1755-0998.2008.02382.x.


A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.


Genetic and ecological data provide incongruent interpretations of population structure and dispersal in naturally subdivided populations of white-tailed ptarmigan (Lagopus leucura).

Fedy BC, Martin K, Ritland C, Young J.

Mol Ecol. 2008 Apr;17(8):1905-17. doi: 10.1111/j.1365-294X.2008.03720.x. Epub 2008 Mar 17.


Inbreeding in Japanese quail estimated by pedigree and microsatellite analyses.

Kim SH, Cheng KM, Ritland C, Ritland K, Silversides FG.

J Hered. 2007 Jul-Aug;98(4):378-81. Epub 2007 Jun 29.


Conifer defense against insects: proteome analysis of Sitka spruce (Picea sitchensis) bark induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi).

Lippert D, Chowrira S, Ralph SG, Zhuang J, Aeschliman D, Ritland C, Ritland K, Bohlmann J.

Proteomics. 2007 Jan;7(2):248-70.


Genomics of hybrid poplar (Populus trichocarpax deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar.

Ralph S, Oddy C, Cooper D, Yueh H, Jancsik S, Kolosova N, Philippe RN, Aeschliman D, White R, Huber D, Ritland CE, Benoit F, Rigby T, Nantel A, Butterfield YS, Kirkpatrick R, Chun E, Liu J, Palmquist D, Wynhoven B, Stott J, Yang G, Barber S, Holt RA, Siddiqui A, Jones SJ, Marra MA, Ellis BE, Douglas CJ, Ritland K, Bohlmann J.

Mol Ecol. 2006 Apr;15(5):1275-97.

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