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Results: 1 to 20 of 22

1.

Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots.

Oliveira JV, Borges TA, Corrêa dos Santos RA, Freitas LF, Rosa CA, Goldman GH, Riaño-Pachón DM.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2159-68. doi: 10.1099/ijs.0.060103-0. Epub 2014 Mar 28.

PMID:
24682702
[PubMed - in process]
2.

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana.

Omidbakhshfard MA, Winck FV, Arvidsson S, Riaño-Pachón DM, Mueller-Roeber B.

J Integr Plant Biol. 2014 Jun;56(6):527-38. doi: 10.1111/jipb.12151. Epub 2014 Mar 16.

PMID:
24373132
[PubMed - in process]
3.

Draft Genome Sequence of Pseudozyma brasiliensis sp. nov. Strain GHG001, a High Producer of Endo-1,4-Xylanase Isolated from an Insect Pest of Sugarcane.

Oliveira JV, Dos Santos RA, Borges TA, Riaño-Pachón DM, Goldman GH.

Genome Announc. 2013 Dec 19;1(6). pii: e00920-13. doi: 10.1128/genomeA.00920-13.

PMID:
24356824
[PubMed]
Free PMC Article
4.

Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

Vischi Winck F, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B.

PLoS One. 2013 Nov 1;8(11):e79909. doi: 10.1371/journal.pone.0079909. eCollection 2013.

PMID:
24224019
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to Phytophthora infestans.

López-Kleine L, Pinzón A, Chaves D, Restrepo S, Riaño-Pachón DM.

Genomics. 2013 Apr;101(4):249-55. doi: 10.1016/j.ygeno.2013.02.001. Epub 2013 Feb 9.

PMID:
23402767
[PubMed - indexed for MEDLINE]
6.

Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs).

Dreyer I, Gomez-Porras JL, Riaño-Pachón DM, Hedrich R, Geiger D.

Front Plant Sci. 2012 Nov 29;3:263. doi: 10.3389/fpls.2012.00263. eCollection 2012.

PMID:
23226151
[PubMed]
Free PMC Article
7.

Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants.

Gomez-Porras JL, Riaño-Pachón DM, Benito B, Haro R, Sklodowski K, Rodríguez-Navarro A, Dreyer I.

Front Plant Sci. 2012 Aug 2;3:167. doi: 10.3389/fpls.2012.00167. eCollection 2012.

PMID:
22876252
[PubMed]
Free PMC Article
8.

The nuclear proteome of the green alga Chlamydomonas reinhardtii.

Winck FV, Riaño-Pachón DM, Sommer F, Rupprecht J, Mueller-Roeber B.

Proteomics. 2012 Jan;12(1):95-100. doi: 10.1002/pmic.201000782. Epub 2011 Dec 9.

PMID:
22065562
[PubMed - indexed for MEDLINE]
9.

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

Rohrmann J, Tohge T, Alba R, Osorio S, Caldana C, McQuinn R, Arvidsson S, van der Merwe MJ, Riaño-Pachón DM, Mueller-Roeber B, Fei Z, Nesi AN, Giovannoni JJ, Fernie AR.

Plant J. 2011 Dec;68(6):999-1013. doi: 10.1111/j.1365-313X.2011.04750.x. Epub 2011 Oct 25.

PMID:
21851430
[PubMed - indexed for MEDLINE]
10.

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.

PMID:
21551031
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity.

Lang D, Weiche B, Timmerhaus G, Richardt S, Riaño-Pachón DM, Corrêa LG, Reski R, Mueller-Roeber B, Rensing SA.

Genome Biol Evol. 2010 Jul 19;2:488-503. doi: 10.1093/gbe/evq032.

PMID:
20644220
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana.

Riaño-Pachón DM, Kleessen S, Neigenfind J, Durek P, Weber E, Engelsberger WR, Walther D, Selbig J, Schulze WX, Kersten B.

BMC Genomics. 2010 Jul 1;11:411. doi: 10.1186/1471-2164-11-411.

PMID:
20594336
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PlnTFDB: updated content and new features of the plant transcription factor database.

Pérez-Rodríguez P, Riaño-Pachón DM, Corrêa LG, Rensing SA, Kersten B, Mueller-Roeber B.

Nucleic Acids Res. 2010 Jan;38(Database issue):D822-7. doi: 10.1093/nar/gkp805. Epub 2009 Oct 25.

PMID:
19858103
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

Arvidsson S, Kwasniewski M, Riaño-Pachón DM, Mueller-Roeber B.

BMC Bioinformatics. 2008 Nov 1;9:465. doi: 10.1186/1471-2105-9-465.

PMID:
18976492
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GabiPD: the GABI primary database--a plant integrative 'omics' database.

Riaño-Pachón DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S, Kersten B.

Nucleic Acids Res. 2009 Jan;37(Database issue):D954-9. doi: 10.1093/nar/gkn611. Epub 2008 Sep 23.

PMID:
18812395
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Transcription factors regulating leaf senescence in Arabidopsis thaliana.

Balazadeh S, Riaño-Pachón DM, Mueller-Roeber B.

Plant Biol (Stuttg). 2008 Sep;10 Suppl 1:63-75. doi: 10.1111/j.1438-8677.2008.00088.x. Review.

PMID:
18721312
[PubMed - indexed for MEDLINE]
17.

The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes.

Corrêa LG, Riaño-Pachón DM, Schrago CG, dos Santos RV, Mueller-Roeber B, Vincentz M.

PLoS One. 2008 Aug 13;3(8):e2944. doi: 10.1371/journal.pone.0002944.

PMID:
18698409
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Green transcription factors: a chlamydomonas overview.

Riaño-Pachón DM, Corrêa LG, Trejos-Espinosa R, Mueller-Roeber B.

Genetics. 2008 May;179(1):31-9. doi: 10.1534/genetics.107.086090.

PMID:
18493038
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernández E, Fukuzawa H, González-Ballester D, González-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riaño-Pachón DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martínez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR.

Science. 2007 Oct 12;318(5848):245-50.

PMID:
17932292
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice.

Gómez-Porras JL, Riaño-Pachón DM, Dreyer I, Mayer JE, Mueller-Roeber B.

BMC Genomics. 2007 Aug 1;8:260.

PMID:
17672917
[PubMed - indexed for MEDLINE]
Free PMC Article

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