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Items: 1 to 20 of 32

1.

Analysis of Sensitive CO2 Pathways and Genes Related to Carbon Uptake and Accumulation in Chlamydomonas reinhardtii through Genomic Scale Modeling and Experimental Validation.

Winck FV, Melo DO, Riaño-Pachón DM, Martins MC, Caldana C, Barrios AF.

Front Plant Sci. 2016 Feb 9;7:43. doi: 10.3389/fpls.2016.00043. eCollection 2016.

2.

Physiological and transcriptional analyses of developmental stages along sugarcane leaf.

Mattiello L, Riaño-Pachón DM, Martins MC, da Cruz LP, Bassi D, Marchiori PE, Ribeiro RV, Labate MT, Labate CA, Menossi M.

BMC Plant Biol. 2015 Dec 29;15:300. doi: 10.1186/s12870-015-0694-z.

3.

Draft Genome Sequence of Komagataeibacter intermedius Strain AF2, a Producer of Cellulose, Isolated from Kombucha Tea.

Dos Santos RA, Berretta AA, Barud Hda S, Ribeiro SJ, González-García LN, Zucchi TD, Goldman GH, Riaño-Pachón DM.

Genome Announc. 2015 Dec 3;3(6). pii: e01404-15. doi: 10.1128/genomeA.01404-15.

4.

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles.

Winck FV, Prado Ribeiro AC, Ramos Domingues R, Ling LY, Riaño-Pachón DM, Rivera C, Brandão TB, Gouvea AF, Santos-Silva AR, Coletta RD, Paes Leme AF.

Sci Rep. 2015 Nov 5;5:16305. doi: 10.1038/srep16305.

5.

On and Under the Skin: Emerging Basidiomycetous Yeast Infections Caused by Trichosporon Species.

Mariné M, Brown NA, Riaño-Pachón DM, Goldman GH.

PLoS Pathog. 2015 Jul 30;11(7):e1004982. doi: 10.1371/journal.ppat.1004982. eCollection 2015 Jul. Review. No abstract available.

6.

Draft genome sequences of clostridium strains native to Colombia with the potential to produce solvents.

Rosas-Morales JP, Perez-Mancilla X, López-Kleine L, Montoya Castaño D, Riaño-Pachón DM.

Genome Announc. 2015 May 21;3(3). pii: e00486-15. doi: 10.1128/genomeA.00486-15.

7.

Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.

Mandelli F, Oliveira Ramires B, Couger MB, Paixão DA, Camilo CM, Polikarpov I, Prade R, Riaño-Pachón DM, Squina FM.

Genome Announc. 2015 May 14;3(3). pii: e00475-15. doi: 10.1128/genomeA.00475-15.

8.

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

Cristancho MA, Botero-Rozo DO, Giraldo W, Tabima J, Riaño-Pachón DM, Escobar C, Rozo Y, Rivera LF, Durán A, Restrepo S, Eilam T, Anikster Y, Gaitán AL.

Front Plant Sci. 2014 Oct 31;5:594. doi: 10.3389/fpls.2014.00594. eCollection 2014.

9.

Identification of transcription factor genes and their correlation with the high diversity of stramenopiles.

Buitrago-Flórez FJ, Restrepo S, Riaño-Pachón DM.

PLoS One. 2014 Nov 6;9(11):e111841. doi: 10.1371/journal.pone.0111841. eCollection 2014.

10.

Draft Genome Sequence of Komagataeibacter rhaeticus Strain AF1, a High Producer of Cellulose, Isolated from Kombucha Tea.

Dos Santos RA, Berretta AA, Barud Hda S, Ribeiro SJ, González-García LN, Zucchi TD, Goldman GH, Riaño-Pachón DM.

Genome Announc. 2014 Jul 24;2(4). pii: e00731-14. doi: 10.1128/genomeA.00731-14.

11.

Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots.

Oliveira JV, Borges TA, Corrêa dos Santos RA, Freitas LF, Rosa CA, Goldman GH, Riaño-Pachón DM.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2159-68. doi: 10.1099/ijs.0.060103-0. Epub 2014 Mar 28.

PMID:
24682702
12.

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana.

Omidbakhshfard MA, Winck FV, Arvidsson S, Riaño-Pachón DM, Mueller-Roeber B.

J Integr Plant Biol. 2014 Jun;56(6):527-38. doi: 10.1111/jipb.12151. Epub 2014 Mar 16.

PMID:
24373132
13.

Draft Genome Sequence of Pseudozyma brasiliensis sp. nov. Strain GHG001, a High Producer of Endo-1,4-Xylanase Isolated from an Insect Pest of Sugarcane.

Oliveira JV, Dos Santos RA, Borges TA, Riaño-Pachón DM, Goldman GH.

Genome Announc. 2013 Dec 19;1(6). pii: e00920-13. doi: 10.1128/genomeA.00920-13.

14.

Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

Winck FV, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B.

PLoS One. 2013 Nov 1;8(11):e79909. doi: 10.1371/journal.pone.0079909. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/63d1c5f9-82c8-406b-b60e-b7d9ecba9408. Vischi Winck, Flavia [corrected to Winck, Flavia Vischi].

15.

Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to Phytophthora infestans.

López-Kleine L, Pinzón A, Chaves D, Restrepo S, Riaño-Pachón DM.

Genomics. 2013 Apr;101(4):249-55. doi: 10.1016/j.ygeno.2013.02.001. Epub 2013 Feb 9.

16.

Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs).

Dreyer I, Gomez-Porras JL, Riaño-Pachón DM, Hedrich R, Geiger D.

Front Plant Sci. 2012 Nov 29;3:263. doi: 10.3389/fpls.2012.00263. eCollection 2012.

17.

Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants.

Gomez-Porras JL, Riaño-Pachón DM, Benito B, Haro R, Sklodowski K, Rodríguez-Navarro A, Dreyer I.

Front Plant Sci. 2012 Aug 2;3:167. doi: 10.3389/fpls.2012.00167. eCollection 2012.

18.

The nuclear proteome of the green alga Chlamydomonas reinhardtii.

Winck FV, Riaño-Pachón DM, Sommer F, Rupprecht J, Mueller-Roeber B.

Proteomics. 2012 Jan;12(1):95-100. doi: 10.1002/pmic.201000782. Epub 2011 Dec 9.

PMID:
22065562
19.

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

Rohrmann J, Tohge T, Alba R, Osorio S, Caldana C, McQuinn R, Arvidsson S, van der Merwe MJ, Riaño-Pachón DM, Mueller-Roeber B, Fei Z, Nesi AN, Giovannoni JJ, Fernie AR.

Plant J. 2011 Dec;68(6):999-1013. doi: 10.1111/j.1365-313X.2011.04750.x. Epub 2011 Oct 25.

20.

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.

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