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Results: 1 to 20 of 34

1.

The transcriptome landscape of early maize meiosis.

Dukowic-Schulze S, Sundararajan A, Mudge J, Ramaraj T, Farmer AD, Wang M, Sun Q, Pillardy J, Kianian S, Retzel EF, Pawlowski WP, Chen C.

BMC Plant Biol. 2014 May 3;14:118. doi: 10.1186/1471-2229-14-118.

PMID:
24885405
[PubMed - in process]
Free PMC Article
2.

Comparative transcriptomics of early meiosis in Arabidopsis and maize.

Dukowic-Schulze S, Harris A, Li J, Sundararajan A, Mudge J, Retzel EF, Pawlowski WP, Chen C.

J Genet Genomics. 2014 Mar 20;41(3):139-52. doi: 10.1016/j.jgg.2013.11.007. Epub 2013 Dec 14.

PMID:
24656234
[PubMed - indexed for MEDLINE]
Free Article
3.

Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development.

Chang TC, Yang Y, Retzel EF, Liu WS.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12373-8. doi: 10.1073/pnas.1221104110. Epub 2013 Jul 10. Erratum in: Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3195.

PMID:
23842086
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana.

Chen C, Retzel EF.

Methods Mol Biol. 2013;990:203-13. doi: 10.1007/978-1-62703-333-6_20.

PMID:
23559216
[PubMed - indexed for MEDLINE]
5.

Characterization of a set of novel meiotically-active promoters in Arabidopsis.

Li J, Farmer AD, Lindquist IE, Dukowic-Schulze S, Mudge J, Li T, Retzel EF, Chen C.

BMC Plant Biol. 2012 Jul 9;12:104. doi: 10.1186/1471-2229-12-104.

PMID:
22776406
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

PMID:
22089132
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A high-resolution comparative map of porcine chromosome 4 (SSC4).

Ma JG, Chang TC, Yasue H, Farmer AD, Crow JA, Eyer K, Hiraiwa H, Shimogiri T, Meyers SN, Beever JE, Schook LB, Retzel EF, Beattie CW, Liu WS.

Anim Genet. 2011 Aug;42(4):440-4. doi: 10.1111/j.1365-2052.2010.02140.x. Epub 2010 Dec 1.

PMID:
21749428
[PubMed - indexed for MEDLINE]
8.

The expansion of the PRAME gene family in Eutheria.

Chang TC, Yang Y, Yasue H, Bharti AK, Retzel EF, Liu WS.

PLoS One. 2011 Feb 10;6(2):e16867. doi: 10.1371/journal.pone.0016867.

PMID:
21347312
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae.

Yang Y, Chang TC, Yasue H, Bharti AK, Retzel EF, Liu WS.

BMC Genomics. 2011 Jan 7;12:13. doi: 10.1186/1471-2164-12-13.

PMID:
21214936
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes.

Chen C, Farmer AD, Langley RJ, Mudge J, Crow JA, May GD, Huntley J, Smith AG, Retzel EF.

BMC Plant Biol. 2010 Dec 17;10:280. doi: 10.1186/1471-2229-10-280.

PMID:
21167045
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reaching the depth of the Chinese hamster ovary cell transcriptome.

Jacob NM, Kantardjieff A, Yusufi FN, Retzel EF, Mulukutla BC, Chuah SH, Yap M, Hu WS.

Biotechnol Bioeng. 2010 Apr 1;105(5):1002-9. doi: 10.1002/bit.22588.

PMID:
19882695
[PubMed - indexed for MEDLINE]
12.

Management of High-Throughput DNA Sequencing Projects: Alpheus.

Miller NA, Kingsmore SF, Farmer A, Langley RJ, Mudge J, Crow JA, Gonzalez AJ, Schilkey FD, Kim RJ, van Velkinburgh J, May GD, Black CF, Myers MK, Utsey JP, Frost NS, Sugarbaker DJ, Bueno R, Gullans SR, Baxter SM, Day SW, Retzel EF.

J Comput Sci Syst Biol. 2008 Dec 26;1:132.

PMID:
20151039
[PubMed]
Free PMC Article
13.

Legume Resources: MtDB and Medicago.Org.

Retzel EF, Johnson JE, Crow JA, Lamblin AF, Paule CE.

Methods Mol Biol. 2007;406:261-74.

PMID:
18287697
[PubMed - indexed for MEDLINE]
14.

ForestTreeDB: a database dedicated to the mining of tree transcriptomes.

Pavy N, Johnson JJ, Crow JA, Paule C, Kunau T, MacKay J, Retzel EF.

Nucleic Acids Res. 2007 Jan;35(Database issue):D888-94. Epub 2006 Nov 27.

PMID:
17130142
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.

Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14959-64. Epub 2006 Sep 26. Erratum in: Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):18026. Scheix, Thomas [corrected to Schiex, Thomas].

PMID:
17003129
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Databases and information integration for the Medicago truncatula genome and transcriptome.

Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, May GD, Kim D, Cook DR, Roe BA, Town CD, Young ND, Retzel EF.

Plant Physiol. 2005 May;138(1):38-46.

PMID:
15888676
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

wCLUTO: a Web-enabled clustering toolkit.

Rasmussen MD, Deshpande MS, Karypis G, Johnson J, Crow JA, Retzel EF.

Plant Physiol. 2003 Oct;133(2):510-6.

PMID:
14555780
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MGView: an alignment and visualization tool to enhance gap closure of microbial genomes.

Herron-Olson L, Freeman J, Zhang Q, Retzel EF, Kapur V.

Nucleic Acids Res. 2003 Sep 1;31(17):e106.

PMID:
12930980
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

TableView: portable genomic data visualization.

Johnson JE, Stromvik MV, Silverstein KA, Crow JA, Shoop E, Retzel EF.

Bioinformatics. 2003 Jul 1;19(10):1292-3.

PMID:
12835275
[PubMed - indexed for MEDLINE]
Free Article
20.

MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome.

Lamblin AF, Crow JA, Johnson JE, Silverstein KA, Kunau TM, Kilian A, Benz D, Stromvik M, Endré G, VandenBosch KA, Cook DR, Young ND, Retzel EF.

Nucleic Acids Res. 2003 Jan 1;31(1):196-201.

PMID:
12519981
[PubMed - indexed for MEDLINE]
Free PMC Article

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