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Results: 19

1.

Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change.

Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J.

Mol Biol Evol. 2014 Apr;31(4):903-16. doi: 10.1093/molbev/msu042. Epub 2014 Jan 9.

PMID:
24408913
[PubMed - in process]
2.

Phylogenomics and coalescent analyses resolve extant seed plant relationships.

Xi Z, Rest JS, Davis CC.

PLoS One. 2013 Nov 21;8(11):e80870. doi: 10.1371/journal.pone.0080870. eCollection 2013.

PMID:
24278335
[PubMed - in process]
Free PMC Article
3.

Massive mitochondrial gene transfer in a parasitic flowering plant clade.

Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC.

PLoS Genet. 2013;9(2):e1003265. doi: 10.1371/journal.pgen.1003265. Epub 2013 Feb 14.

PMID:
23459037
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast.

Opulente DA, Morales CM, Carey LB, Rest JS.

PLoS One. 2013;8(1):e54403. doi: 10.1371/journal.pone.0054403. Epub 2013 Jan 10.

PMID:
23326606
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Nonlinear fitness consequences of variation in expression level of a eukaryotic gene.

Rest JS, Morales CM, Waldron JB, Opulente DA, Fisher J, Moon S, Bullaughey K, Carey LB, Dedousis D.

Mol Biol Evol. 2013 Feb;30(2):448-56. doi: 10.1093/molbev/mss248. Epub 2012 Oct 27.

PMID:
23104081
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Horizontal transfer of expressed genes in a parasitic flowering plant.

Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC.

BMC Genomics. 2012 Jun 8;13:227.

PMID:
22681756
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast.

Rest JS, Bullaughey K, Morris GP, Li WH.

PLoS One. 2012;7(2):e32274. doi: 10.1371/journal.pone.0032274. Epub 2012 Feb 23.

PMID:
22384202
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Common fragile sites are characterized by histone hypoacetylation.

Jiang Y, Lucas I, Young DJ, Davis EM, Karrison T, Rest JS, Le Beau MM.

Hum Mol Genet. 2009 Dec 1;18(23):4501-12. doi: 10.1093/hmg/ddp410. Epub 2009 Aug 28.

PMID:
19717471
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sulfate activation enzymes: phylogeny and association with pyrophosphatase.

Bradley ME, Rest JS, Li WH, Schwartz NB.

J Mol Evol. 2009 Jan;68(1):1-13. doi: 10.1007/s00239-008-9181-6. Epub 2008 Dec 6.

PMID:
19067028
[PubMed - indexed for MEDLINE]
10.

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.

Brown JW, Rest JS, GarcĂ­a-Moreno J, Sorenson MD, Mindell DP.

BMC Biol. 2008 Jan 28;6:6. doi: 10.1186/1741-7007-6-6.

PMID:
18226223
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Interaction of human HSP22 (HSPB8) with other small heat shock proteins.

Sun X, Fontaine JM, Rest JS, Shelden EA, Welsh MJ, Benndorf R.

J Biol Chem. 2004 Jan 23;279(4):2394-402. Epub 2003 Oct 31.

PMID:
14594798
[PubMed - indexed for MEDLINE]
Free Article
12.

SARS associated coronavirus has a recombinant polymerase and coronaviruses have a history of host-shifting.

Rest JS, Mindell DP.

Infect Genet Evol. 2003 Sep;3(3):219-25.

PMID:
14522185
[PubMed - indexed for MEDLINE]
13.

Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome.

Rest JS, Ast JC, Austin CC, Waddell PJ, Tibbetts EA, Hay JM, Mindell DP.

Mol Phylogenet Evol. 2003 Nov;29(2):289-97.

PMID:
13678684
[PubMed - indexed for MEDLINE]
14.

The sperm outer dense fiber protein is the 10th member of the superfamily of mammalian small stress proteins.

Fontaine JM, Rest JS, Welsh MJ, Benndorf R.

Cell Stress Chaperones. 2003 Spring;8(1):62-9.

PMID:
12820655
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Retroids in archaea: phylogeny and lateral origins.

Rest JS, Mindell DP.

Mol Biol Evol. 2003 Jul;20(7):1134-42. Epub 2003 May 30.

PMID:
12777534
[PubMed - indexed for MEDLINE]
Free Article
16.

Differential rates of evolution for the ZFY-related zinc finger genes, Zfy, Zfx, and Zfa in the mouse genus Mus.

Tucker PK, Adkins RM, Rest JS.

Mol Biol Evol. 2003 Jun;20(6):999-1005. Epub 2003 Apr 25.

PMID:
12716983
[PubMed - indexed for MEDLINE]
Free Article
17.

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny.

Dimmic MW, Rest JS, Mindell DP, Goldstein RA.

J Mol Evol. 2002 Jul;55(1):65-73.

PMID:
12165843
[PubMed - indexed for MEDLINE]
18.

Distribution of DHPS mutations among ITS subtypes of P. carinii f. sp. hominis.

Meshnick SR, Hossler PA, Enger KS, Kazanjian P, Rest JS, Mindell D, Li B, Lee CH, Nimri LF, Carter JL, Beard CB, Huang L.

J Eukaryot Microbiol. 2001;Suppl:126S-128S. No abstract available.

PMID:
11906022
[PubMed - indexed for MEDLINE]
19.

Isolation and characterization of a zebrafish homologue of the cone rod homeobox gene.

Liu Y, Shen Y, Rest JS, Raymond PA, Zack DJ.

Invest Ophthalmol Vis Sci. 2001 Feb;42(2):481-7.

PMID:
11157887
[PubMed - indexed for MEDLINE]
Free Article

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