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Results: 1 to 20 of 101

1.

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.

Renaud G, Stenzel U, Maricic T, Wiebe V, Kelso J.

Bioinformatics. 2014 Oct 30. pii: btu719. [Epub ahead of print]

PMID:
25359895
[PubMed - as supplied by publisher]
Free Article
2.

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.

Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM.

BMC Bioinformatics. 2014 Oct 13;15:329. doi: 10.1186/1471-2105-15-329.

PMID:
25311246
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.

Lippold S, Xu H, Ko A, Li M, Renaud G, Butthof A, Schröder R, Stoneking M.

Investig Genet. 2014 Sep 24;5:13. doi: 10.1186/2041-2223-5-13. eCollection 2014.

PMID:
25254093
[PubMed]
Free PMC Article
4.

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J.

Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673.

PMID:
25230663
[PubMed - indexed for MEDLINE]
5.

leeHom: adaptor trimming and merging for Illumina sequencing reads.

Renaud G, Stenzel U, Kelso J.

Nucleic Acids Res. 2014 Oct;42(18):e141. doi: 10.1093/nar/gku699. Epub 2014 Aug 6.

PMID:
25100869
[PubMed - indexed for MEDLINE]
Free Article
6.

Assessment of carotid atherosclerosis, intraplaque neovascularization, and plaque ulceration using quantitative contrast-enhanced ultrasound in asymptomatic patients with diabetes mellitus.

van den Oord SC, Akkus Z, Renaud G, Bosch JG, van der Steen AF, Sijbrands EJ, Schinkel AF.

Eur Heart J Cardiovasc Imaging. 2014 Nov;15(11):1213-8. doi: 10.1093/ehjci/jeu127. Epub 2014 Jun 27.

PMID:
24972806
[PubMed - in process]
7.

Quantitative Contrast-Enhanced Ultrasound of Intraplaque Neovascularization in Patients with Carotid Atherosclerosis.

van den Oord SC, Akkus Z, Bosch JG, Hoogi A, Ten Kate GL, Renaud G, Sijbrands EJ, Verhagen HJ, van der Lugt A, Adam D, de Jong N, van der Steen AF, Schinkel AF.

Ultraschall Med. 2014 May 13. [Epub ahead of print]

PMID:
24824762
[PubMed - as supplied by publisher]
8.

Patterns of coding variation in the complete exomes of three Neandertals.

Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, Stenzel U, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajković D, Kucan Ž, Gušic I, Shunkov MV, Derevianko AP, Viola B, Meyer M, Kelso J, Andrés AM, Pääbo S.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6666-71. doi: 10.1073/pnas.1405138111. Epub 2014 Apr 21.

PMID:
24753607
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Imaging microvasculature with contrast-enhanced ultraharmonic ultrasound.

Maresca D, Skachkov I, Renaud G, Jansen K, van Soest G, de Jong N, van der Steen AF.

Ultrasound Med Biol. 2014 Jun;40(6):1318-28. doi: 10.1016/j.ultrasmedbio.2013.12.029. Epub 2014 Mar 6.

PMID:
24613639
[PubMed - indexed for MEDLINE]
10.

Low-amplitude non-linear volume vibrations of single microbubbles measured with an "acoustical camera".

Renaud G, Bosch JG, Van Der Steen AF, De Jong N.

Ultrasound Med Biol. 2014 Jun;40(6):1282-95. doi: 10.1016/j.ultrasmedbio.2013.12.018. Epub 2014 Mar 7.

PMID:
24613552
[PubMed - indexed for MEDLINE]
11.

[It takes a heart and a lot of time].

Renaud G.

Krankenpfl Soins Infirm. 2013;106(11):12-3, 62-3, 86-7. French, German, Italian. No abstract available.

PMID:
24479219
[PubMed - indexed for MEDLINE]
12.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

PMID:
24352235
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

New quantification methods for carotid intra-plaque neovascularization using contrast-enhanced ultrasound.

Akkus Z, Hoogi A, Renaud G, van den Oord SC, Ten Kate GL, Schinkel AF, Adam D, de Jong N, van der Steen AF, Bosch JG.

Ultrasound Med Biol. 2014 Jan;40(1):25-36. doi: 10.1016/j.ultrasmedbio.2013.09.010. Epub 2013 Oct 22.

PMID:
24161799
[PubMed - indexed for MEDLINE]
14.

Ultrasound propagation in trabecular bone: a numerical study of the influence of microcracks.

Callé S, Moreschi H, Renaud G, Defontaine M.

Ultrasonics. 2014 Jul;54(5):1231-6. doi: 10.1016/j.ultras.2013.08.003. Epub 2013 Aug 30.

PMID:
24041497
[PubMed - indexed for MEDLINE]
15.

Strains induced by point defects in graphene on a metal.

Blanc N, Jean F, Krasheninnikov AV, Renaud G, Coraux J.

Phys Rev Lett. 2013 Aug 23;111(8):085501. Epub 2013 Aug 20.

PMID:
24010451
[PubMed]
16.

Far wall pseudo-enhancement: a neglected artifact in carotid contrast-enhanced ultrasound?

van den Oord SC, Renaud G, Bosch JG, de Jong N, van der Steen AF, Schinkel AF.

Atherosclerosis. 2013 Aug;229(2):451-2. doi: 10.1016/j.atherosclerosis.2013.04.036. Epub 2013 Jun 24. No abstract available.

PMID:
23880203
[PubMed - indexed for MEDLINE]
17.

Anisotropy of dynamic acoustoelasticity in limestone, influence of conditioning, and comparison with nonlinear resonance spectroscopy.

Renaud G, Rivière J, Haupert S, Laugier P.

J Acoust Soc Am. 2013 Jun;133(6):3706-18. doi: 10.1121/1.4802909.

PMID:
23742326
[PubMed]
18.

Distinct underlying mechanisms of limb and respiratory muscle fiber weaknesses in nemaline myopathy.

Lindqvist J, Cheng AJ, Renaud G, Hardeman EC, Ochala J.

J Neuropathol Exp Neurol. 2013 Jun;72(6):472-81. doi: 10.1097/NEN.0b013e318293b1cc.

PMID:
23656990
[PubMed - indexed for MEDLINE]
19.

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.

Renaud G, Kircher M, Stenzel U, Kelso J.

Bioinformatics. 2013 May 1;29(9):1208-9. doi: 10.1093/bioinformatics/btt117. Epub 2013 Mar 6.

PMID:
23471300
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Hormone replacement therapy improves contractile function and myonuclear organization of single muscle fibres from postmenopausal monozygotic female twin pairs.

Qaisar R, Renaud G, Hedstrom Y, Pöllänen E, Ronkainen P, Kaprio J, Alen M, Sipilä S, Artemenko K, Bergquist J, Kovanen V, Larsson L.

J Physiol. 2013 May 1;591(Pt 9):2333-44. doi: 10.1113/jphysiol.2012.250092. Epub 2013 Mar 4.

PMID:
23459759
[PubMed - indexed for MEDLINE]
Free PMC Article

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