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Items: 1 to 20 of 25


Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil.

Dantas NG, Suffys PN, Carvalho Wda S, Gomes HM, de Almeida IN, de Assis LJ, Augusto CJ, Gomgnimbou MK, Refregier G, Sola C, de Miranda SS.

BMC Infect Dis. 2015 Aug 1;15:306. doi: 10.1186/s12879-015-1057-y.


Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Azé J, Sola C, Zhang J, Lafosse-Marin F, Yasmin M, Siddiqui R, Kremer K, van Soolingen D, Refrégier G.

PLoS One. 2015 Jul 8;10(7):e0130912. doi: 10.1371/journal.pone.0130912. eCollection 2015.


Molecular epidemiology of tuberculosis in Sicily, Italy: what has changed after a decade?

Bonura C, Gomgnimbou MK, Refrégier G, Aleo A, Fasciana T, Giammanco A, Sola C, Mammina C.

BMC Infect Dis. 2014 Nov 19;14:602. doi: 10.1186/s12879-014-0602-4.


Multi-drug resistant Mycobacterium tuberculosis complex genetic diversity and clues on recent transmission in Punjab, Pakistan.

Yasmin M, Gomgnimbou MK, Siddiqui RT, Refrégier G, Sola C.

Infect Genet Evol. 2014 Oct;27:6-14. doi: 10.1016/j.meegid.2014.06.017. Epub 2014 Jun 27.


Validation of a microbead-based format for spoligotyping of Legionella pneumophila.

Gomgnimbou MK, Ginevra C, Peron-Cane C, Versapuech M, Refrégier G, Jacotin N, Sola C, Jarraud S.

J Clin Microbiol. 2014 Jul;52(7):2410-5. doi: 10.1128/JCM.00219-14. Epub 2014 Apr 23.


Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices.

Gomgnimbou MK, Hernández-Neuta I, Panaiotov S, Bachiyska E, Palomino JC, Martin A, del Portillo P, Refregier G, Sola C.

J Clin Microbiol. 2013 Nov;51(11):3527-34. doi: 10.1128/JCM.01523-13. Epub 2013 Aug 21.


Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution.

de Vienne DM, Refrégier G, López-Villavicencio M, Tellier A, Hood ME, Giraud T.

New Phytol. 2013 Apr;198(2):347-85. doi: 10.1111/nph.12150. Epub 2013 Feb 25. Review.


"Spoligoriftyping," a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system.

Gomgnimbou MK, Abadia E, Zhang J, Refrégier G, Panaiotov S, Bachiyska E, Sola C.

J Clin Microbiol. 2012 Oct;50(10):3172-9. doi: 10.1128/JCM.00976-12. Epub 2012 Jul 18.


A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria.

Lawson L, Zhang J, Gomgnimbou MK, Abdurrahman ST, Le Moullec S, Mohamed F, Uzoewulu GN, Sogaolu OM, Goh KS, Emenyonu N, Refrégier G, Cuevas LE, Sola C.

PLoS One. 2012;7(6):e38409. doi: 10.1371/journal.pone.0038409. Epub 2012 Jun 18.


Spoligotyping of Mycobacterium africanum, Burkina Faso.

Gomgnimbou MK, Refrégier G, Diagbouga SP, Adama S, Kaboré A, Ouiminga A, Sola C.

Emerg Infect Dis. 2012 Jan;18(1):117-9. doi: 10.3201/eid1801.110275.


Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis.

Borile C, Labarre M, Franz S, Sola C, Refrégier G.

BMC Bioinformatics. 2011 Jun 2;12:224. doi: 10.1186/1471-2105-12-224.


The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes.

Abadia E, Zhang J, Ritacco V, Kremer K, Ruimy R, Rigouts L, Gomes HM, Elias AR, Fauville-Dufaux M, Stoffels K, Rasolofo-Razanamparany V, Garcia de Viedma D, Herranz M, Al-Hajoj S, Rastogi N, Garzelli C, Tortoli E, Suffys PN, van Soolingen D, Refrégier G, Sola C.

BMC Infect Dis. 2011 Apr 28;11:110. doi: 10.1186/1471-2334-11-110.


A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia.

Zhang J, Heng S, Le Moullec S, Refregier G, Gicquel B, Sola C, Guillard B.

BMC Infect Dis. 2011 Feb 7;11:42. doi: 10.1186/1471-2334-11-42.


Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method.

Abadia E, Zhang J, dos Vultos T, Ritacco V, Kremer K, Aktas E, Matsumoto T, Refregier G, van Soolingen D, Gicquel B, Sola C.

Infect Genet Evol. 2010 Oct;10(7):1066-74. doi: 10.1016/j.meegid.2010.07.006. Epub 2010 Jul 17.


Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay.

Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C.

J Med Microbiol. 2010 Mar;59(Pt 3):285-94. doi: 10.1099/jmm.0.016949-0. Epub 2009 Dec 3.


Rapidly evolving genes in pathogens: methods for detecting positive selection and examples among fungi, bacteria, viruses and protists.

Aguileta G, Refrégier G, Yockteng R, Fournier E, Giraud T.

Infect Genet Evol. 2009 Jul;9(4):656-70. doi: 10.1016/j.meegid.2009.03.010. Epub 2009 Apr 6. Review.


Hybrid sterility and inviability in the parasitic fungal species complex Microbotryum.

De Vienne DM, Refrégier G, Hood ME, Guigue A, Devier B, Vercken E, Smadja C, Deseille A, Giraud T.

J Evol Biol. 2009 Apr;22(4):683-98. doi: 10.1111/j.1420-9101.2009.01702.x. Epub 2009 Feb 18.


Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation.

Refrégier G, Le Gac M, Jabbour F, Widmer A, Shykoff JA, Yockteng R, Hood ME, Giraud T.

BMC Evol Biol. 2008 Mar 27;8:100. doi: 10.1186/1471-2148-8-100.


Speciation in fungi.

Giraud T, Refrégier G, Le Gac M, de Vienne DM, Hood ME.

Fungal Genet Biol. 2008 Jun;45(6):791-802. doi: 10.1016/j.fgb.2008.02.001. Epub 2008 Feb 14. Review.


PERMANENT GENETIC RESOURCES: Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum.

Giraud T, Yockteng R, Marthey S, Chiapello H, Jonot O, Lopez-Villavicencio M, DE Vienne DM, Hood ME, Refregier G, Gendrault-Jacquemard A, Wincker P, Dossat C.

Mol Ecol Resour. 2008 Mar;8(2):387-92. doi: 10.1111/j.1471-8286.2007.01967.x.

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