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Items: 1 to 20 of 95

1.

Draft Genome Sequence of the Pandoraea apista LMG 16407 Type Strain.

Millard AD, Westblade LF, LiPuma JJ, Vavikolanu K, Read TD, Pallen MJ, Burd EM, Constantinidou CI.

Genome Announc. 2015 Nov 12;3(6). pii: e01300-15. doi: 10.1128/genomeA.01300-15.

2.

Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans.

Joseph SJ, Marti H, Didelot X, Castillo-Ramirez S, Read TD, Dean D.

Genome Biol Evol. 2015 Oct 27;7(11):3070-84. doi: 10.1093/gbe/evv201.

3.

Characterization of a spermine/spermidine transport system reveals a novel DNA sequence duplication in Neisseria gonorrhoeae.

Goytia M, Hawel L 3rd, Dhulipala VL, Joseph SJ, Read TD, Shafer WM.

FEMS Microbiol Lett. 2015 Aug;362(16). pii: fnv125. doi: 10.1093/femsle/fnv125. Epub 2015 Jul 30.

PMID:
26229069
4.

'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.

Worby CJ, Read TD.

PLoS One. 2015 Jun 15;10(6):e0129745. doi: 10.1371/journal.pone.0129745. eCollection 2015.

5.

USA300 and USA500 clonal lineages of Staphylococcus aureus do not produce a capsular polysaccharide due to conserved mutations in the cap5 locus.

Boyle-Vavra S, Li X, Alam MT, Read TD, Sieth J, Cywes-Bentley C, Dobbins G, David MZ, Kumar N, Eells SJ, Miller LG, Boxrud DJ, Chambers HF, Lynfield R, Lee JC, Daum RS.

MBio. 2015 Apr 7;6(2). pii: e02585-14. doi: 10.1128/mBio.02585-14.

6.

Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance.

Ezewudo MN, Joseph SJ, Castillo-Ramirez S, Dean D, Del Rio C, Didelot X, Dillon JA, Selden RF, Shafer WM, Turingan RS, Unemo M, Read TD.

PeerJ. 2015 Mar 5;3:e806. doi: 10.7717/peerj.806. eCollection 2015.

7.

Transmission and microevolution of USA300 MRSA in U.S. households: evidence from whole-genome sequencing.

Alam MT, Read TD, Petit RA 3rd, Boyle-Vavra S, Miller LG, Eells SJ, Daum RS, David MZ.

MBio. 2015 Mar 10;6(2):e00054. doi: 10.1128/mBio.00054-15.

8.

Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology.

Read TD, Massey RC.

Genome Med. 2014 Nov 22;6(11):109. doi: 10.1186/s13073-014-0109-z. eCollection 2014.

9.

Overproduction of the MtrCDE efflux pump in Neisseria gonorrhoeae produces unexpected changes in cellular transcription patterns.

Ohneck EA, Goytia M, Rouquette-Loughlin CE, Joseph SJ, Read TD, Jerse AE, Shafer WM.

Antimicrob Agents Chemother. 2015 Jan;59(1):724-6. doi: 10.1128/AAC.04148-14. Epub 2014 Nov 3.

10.

Using genomics to standardize population analysis profile-area under the curve ratio for vancomycin-intermediate Staphylococcus aureus.

Read TD, Satola SW.

J Clin Microbiol. 2014 Oct;52(10):3824-6. doi: 10.1128/JCM.01536-14. Epub 2014 Jul 23. No abstract available.

11.

Using crude whole-genome assemblies of Neisseria gonorrhoeae as a platform for strain analysis: clonal spread of gonorrhea infection in Saskatchewan, Canada.

Vidovic S, Caron C, Taheri A, Thakur SD, Read TD, Kusalik A, Dillon JA.

J Clin Microbiol. 2014 Oct;52(10):3772-6. doi: 10.1128/JCM.01502-14. Epub 2014 Jul 23.

12.

Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD.

PLoS One. 2014 Jun 27;9(6):e99290. doi: 10.1371/journal.pone.0099290. eCollection 2014.

13.

Development of oxacillin resistance in a patient with recurrent Staphylococcus aureus bacteremia.

Burd EM, Alam MT, Passalacqua KD, Kalokhe AS, Eaton ME, Satola SW, Kraft CS, Read TD.

J Clin Microbiol. 2014 Aug;52(8):3114-7. doi: 10.1128/JCM.00615-14. Epub 2014 May 21.

14.

Phase-variable expression of lptA modulates the resistance of Neisseria gonorrhoeae to cationic antimicrobial peptides.

Kandler JL, Joseph SJ, Balthazar JT, Dhulipala V, Read TD, Jerse AE, Shafer WM.

Antimicrob Agents Chemother. 2014 Jul;58(7):4230-3. doi: 10.1128/AAC.03108-14. Epub 2014 May 12.

15.

Functional genomic characterization of virulence factors from necrotizing fasciitis-causing strains of Aeromonas hydrophila.

Grim CJ, Kozlova EV, Ponnusamy D, Fitts EC, Sha J, Kirtley ML, van Lier CJ, Tiner BL, Erova TE, Joseph SJ, Read TD, Shak JR, Joseph SW, Singletary E, Felland T, Baze WB, Horneman AJ, Chopra AK.

Appl Environ Microbiol. 2014 Jul;80(14):4162-83. doi: 10.1128/AEM.00486-14. Epub 2014 May 2.

16.

Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association.

Alam MT, Petit RA 3rd, Crispell EK, Thornton TA, Conneely KN, Jiang Y, Satola SW, Read TD.

Genome Biol Evol. 2014 Apr 30;6(5):1174-85. doi: 10.1093/gbe/evu092.

17.

Predicting the virulence of MRSA from its genome sequence.

Laabei M, Recker M, Rudkin JK, Aldeljawi M, Gulay Z, Sloan TJ, Williams P, Endres JL, Bayles KW, Fey PD, Yajjala VK, Widhelm T, Hawkins E, Lewis K, Parfett S, Scowen L, Peacock SJ, Holden M, Wilson D, Read TD, van den Elsen J, Priest NK, Feil EJ, Hurst LD, Josefsson E, Massey RC.

Genome Res. 2014 May;24(5):839-49. doi: 10.1101/gr.165415.113. Epub 2014 Apr 9.

18.

The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species.

Alam MT, Petit RA 3rd, Read TD, Dove AD.

Gene. 2014 Apr 10;539(1):44-9. doi: 10.1016/j.gene.2014.01.064. Epub 2014 Feb 4.

PMID:
24508271
19.

Genetic evidence for the involvement of the S-layer protein gene sap and the sporulation genes spo0A, spo0B, and spo0F in Phage AP50c infection of Bacillus anthracis.

Plaut RD, Beaber JW, Zemansky J, Kaur AP, George M, Biswas B, Henry M, Bishop-Lilly KA, Mokashi V, Hannah RM, Pope RK, Read TD, Stibitz S, Calendar R, Sozhamannan S.

J Bacteriol. 2014 Mar;196(6):1143-54. doi: 10.1128/JB.00739-13. Epub 2013 Dec 20.

20.

IsdB-dependent hemoglobin binding is required for acquisition of heme by Staphylococcus aureus.

Pishchany G, Sheldon JR, Dickson CF, Alam MT, Read TD, Gell DA, Heinrichs DE, Skaar EP.

J Infect Dis. 2014 Jun 1;209(11):1764-72. doi: 10.1093/infdis/jit817. Epub 2013 Dec 13.

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