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Results: 1 to 20 of 30

1.

StickWRLD as an Interactive Visual Pre-Filter for Canceromics-Centric Expression Quantitative Trait Locus Data.

Rumpf RW, Wolock SL, Ray WC.

Cancer Inform. 2014 Oct 16;13(Suppl 3):63-9. doi: 10.4137/CIN.S14024. eCollection 2014.

PMID:
25368511
[PubMed]
Free PMC Article
2.

Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests.

Ray WC, Rumpf RW, Sullivan B, Callahan N, Magliery T, Machiraju R, Wong B, Krzywinski M, Bartlett CW.

BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S1. doi: 10.1186/1753-6561-8-S2-S1. eCollection 2014.

PMID:
25237388
[PubMed]
Free PMC Article
3.

Collection and extraction of saliva DNA for next generation sequencing.

Goode MR, Cheong SY, Li N, Ray WC, Bartlett CW.

J Vis Exp. 2014 Aug 27;(90). doi: 10.3791/51697.

PMID:
25225892
[PubMed - in process]
4.

Addressing the unmet need for visualizing conditional random fields in biological data.

Ray WC, Wolock SL, Callahan NW, Dong M, Li QQ, Liang C, Magliery TJ, Bartlett CW.

BMC Bioinformatics. 2014 Jul 10;15:202. doi: 10.1186/1471-2105-15-202.

PMID:
25000815
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Structure and function of respiratory syncytial virus surface glycoproteins.

McLellan JS, Ray WC, Peeples ME.

Curr Top Microbiol Immunol. 2013;372:83-104. doi: 10.1007/978-3-642-38919-1_4. Review.

PMID:
24362685
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The ZZ domain of dystrophin in DMD: making sense of missense mutations.

Vulin A, Wein N, Strandjord DM, Johnson EK, Findlay AR, Maiti B, Howard MT, Kaminoh YJ, Taylor LE, Simmons TR, Ray WC, Montanaro F, Ervasti JM, Flanigan KM.

Hum Mutat. 2014 Feb;35(2):257-64. doi: 10.1002/humu.22479. Epub 2013 Dec 2.

PMID:
24302611
[PubMed - indexed for MEDLINE]
7.

Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits.

Justice SS, Li B, Downey JS, Dabdoub SM, Brockson ME, Probst GD, Ray WC, Goodman SD.

PLoS One. 2012;7(10):e48349. doi: 10.1371/journal.pone.0048349. Epub 2012 Oct 25.

PMID:
23133584
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An eQTL biological data visualization challenge and approaches from the visualization community.

Bartlett CW, Cheong SY, Hou L, Paquette J, Lum PY, J├Ąger G, Battke F, Vehlow C, Heinrich J, Nieselt K, Sakai R, Aerts J, Ray WC.

BMC Bioinformatics. 2012;13 Suppl 8:S8. doi: 10.1186/1471-2105-13-S8-S8. Epub 2012 May 18.

PMID:
22607587
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Targeting RSV with vaccines and small molecule drugs.

Costello HM, Ray WC, Chaiwatpongsakorn S, Peeples ME.

Infect Disord Drug Targets. 2012 Apr;12(2):110-28. Review.

PMID:
22335496
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

FIND: a new software tool and development platform for enhanced multicolor flow analysis.

Dabdoub SM, Ray WC, Justice SS.

BMC Bioinformatics. 2011 May 10;12:145. doi: 10.1186/1471-2105-12-145.

PMID:
21569257
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Heme utilization by nontypeable Haemophilus influenzae is essential and dependent on Sap transporter function.

Mason KM, Raffel FK, Ray WC, Bakaletz LO.

J Bacteriol. 2011 May;193(10):2527-35. doi: 10.1128/JB.01313-10. Epub 2011 Mar 25.

PMID:
21441512
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A dynamically masked Gaussian can efficiently approximate a distance calculation for image segmentation.

Dabdoub SM, Justice SS, Ray WC.

Adv Exp Med Biol. 2011;696:425-32. doi: 10.1007/978-1-4419-7046-6_42. No abstract available.

PMID:
21431582
[PubMed - indexed for MEDLINE]
13.

Dramatically reduced precision in microarray analysis retains quantitative properties and provides additional benefits.

Ray WC.

Adv Exp Med Biol. 2011;696:101-11. doi: 10.1007/978-1-4419-7046-6_11.

PMID:
21431551
[PubMed - indexed for MEDLINE]
14.

Analysis of dystrophin deletion mutations predicts age of cardiomyopathy onset in becker muscular dystrophy.

Kaspar RW, Allen HD, Ray WC, Alvarez CE, Kissel JT, Pestronk A, Weiss RB, Flanigan KM, Mendell JR, Montanaro F.

Circ Cardiovasc Genet. 2009 Dec;2(6):544-51. doi: 10.1161/CIRCGENETICS.109.867242. Epub 2009 Sep 30.

PMID:
20031633
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The OxyR regulon in nontypeable Haemophilus influenzae.

Harrison A, Ray WC, Baker BD, Armbruster DW, Bakaletz LO, Munson RS Jr.

J Bacteriol. 2007 Feb;189(3):1004-12. Epub 2006 Dec 1.

PMID:
17142400
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A member of the cathelicidin family of antimicrobial peptides is produced in the upper airway of the chinchilla and its mRNA expression is altered by common viral and bacterial co-pathogens of otitis media.

McGillivary G, Ray WC, Bevins CL, Munson RS Jr, Bakaletz LO.

Mol Immunol. 2007 Mar;44(9):2446-58. Epub 2006 Nov 20.

PMID:
17113647
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments.

Ozer HG, Ray WC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W133-6.

PMID:
16844976
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MAVL/StickWRLD for protein: visualizing protein sequence families to detect non-consensus features.

Ray WC.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W315-9.

PMID:
15980480
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20.

Harrison A, Dyer DW, Gillaspy A, Ray WC, Mungur R, Carson MB, Zhong H, Gipson J, Gipson M, Johnson LS, Lewis L, Bakaletz LO, Munson RS Jr.

J Bacteriol. 2005 Jul;187(13):4627-36.

PMID:
15968074
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments.

Ray WC.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W59-63.

PMID:
15215351
[PubMed - indexed for MEDLINE]
Free PMC Article

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