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Results: 1 to 20 of 80

1.

Selective phosphorylation during early macrophage differentiation.

Zhang H, Qian PY, Ravasi T.

Proteomics. 2015 Aug 26. doi: 10.1002/pmic.201400511. [Epub ahead of print]

PMID:
26307563
2.

Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea.

Giles EC, Saenz-Agudelo P, Hussey NE, Ravasi T, Berumen ML.

Ecol Evol. 2015 Jul;5(13):2487-502. doi: 10.1002/ece3.1511. Epub 2015 Jun 1.

3.

Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.

Cannistraci CV, Alanis-Lobato G, Ravasi T.

Sci Rep. 2015 Jul 21;5:9794. doi: 10.1038/srep09794. No abstract available.

4.

Non-chemotoxic induction of cancer cell death using magnetic nanowires.

Contreras MF, Sougrat R, Zaher A, Ravasi T, Kosel J.

Int J Nanomedicine. 2015 Mar 17;10:2141-53. doi: 10.2147/IJN.S77081. eCollection 2015.

5.

Highlighting nonlinear patterns in population genetics datasets.

Alanis-Lobato G, Cannistraci CV, Eriksson A, Manica A, Ravasi T.

Sci Rep. 2015 Jan 30;5:8140. doi: 10.1038/srep08140.

6.

The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions.

Mavromatis CH, Bokil NJ, Totsika M, Kakkanat A, Schaale K, Cannistraci CV, Ryu T, Beatson SA, Ulett GC, Schembri MA, Sweet MJ, Ravasi T.

Cell Microbiol. 2015 May;17(5):730-46. doi: 10.1111/cmi.12397. Epub 2015 Jan 24.

PMID:
25410299
7.

GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater.

Bayer K, Moitinho-Silva L, Brümmer F, Cannistraci CV, Ravasi T, Hentschel U.

FEMS Microbiol Ecol. 2014 Dec;90(3):832-43. doi: 10.1111/1574-6941.12441. Epub 2014 Nov 10.

PMID:
25318900
8.

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development.

Wong YH, Ryu T, Seridi L, Ghosheh Y, Bougouffa S, Qian PY, Ravasi T.

Sci Rep. 2014 Oct 10;4:6534. doi: 10.1038/srep06534.

9.

Dynamic epigenetic control of highly conserved noncoding elements.

Seridi L, Ryu T, Ravasi T.

PLoS One. 2014 Oct 7;9(10):e109326. doi: 10.1371/journal.pone.0109326. eCollection 2014.

10.

Proteomic profiling during the pre-competent to competent transition of the biofouling polychaete Hydroides elegans.

Zhang Y, Sun J, Zhang H, Chandramouli KH, Xu Y, He LS, Ravasi T, Qian PY.

Biofouling. 2014 Sep;30(8):921-8. doi: 10.1080/08927014.2014.951341.

PMID:
25237770
11.

Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.

Moitinho-Silva L, Seridi L, Ryu T, Voolstra CR, Ravasi T, Hentschel U.

Environ Microbiol. 2014 Dec;16(12):3683-98. doi: 10.1111/1462-2920.12533. Epub 2014 Jul 9.

PMID:
24920529
12.

Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity.

Abdelmohsen UR, Yang C, Horn H, Hajjar D, Ravasi T, Hentschel U.

Mar Drugs. 2014 May 12;12(5):2771-89. doi: 10.3390/md12052771.

13.

A promoter-level mammalian expression atlas.

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, Bertin N, Jørgensen M, Dimont E, Arner E, Schmidl C, Schaefer U, Medvedeva YA, Plessy C, Vitezic M, Severin J, Semple C, Ishizu Y, Young RS, Francescatto M, Alam I, Albanese D, Altschuler GM, Arakawa T, Archer JA, Arner P, Babina M, Rennie S, Balwierz PJ, Beckhouse AG, Pradhan-Bhatt S, Blake JA, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Burroughs AM, Califano A, Cannistraci CV, Carbajo D, Chen Y, Chierici M, Ciani Y, Clevers HC, Dalla E, Davis CA, Detmar M, Diehl AD, Dohi T, Drabløs F, Edge AS, Edinger M, Ekwall K, Endoh M, Enomoto H, Fagiolini M, Fairbairn L, Fang H, Farach-Carson MC, Faulkner GJ, Favorov AV, Fisher ME, Frith MC, Fujita R, Fukuda S, Furlanello C, Furino M, Furusawa J, Geijtenbeek TB, Gibson AP, Gingeras T, Goldowitz D, Gough J, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Harbers M, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto T, Herlyn M, Hitchens KJ, Ho Sui SJ, Hofmann OM, Hoof I, Hori F, Huminiecki L, Iida K, Ikawa T, Jankovic BR, Jia H, Joshi A, Jurman G, Kaczkowski B, Kai C, Kaida K, Kaiho A, Kajiyama K, Kanamori-Katayama M, Kasianov AS, Kasukawa T, Katayama S, Kato S, Kawaguchi S, Kawamoto H, Kawamura YI, Kawashima T, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klinken SP, Knox AJ, Kojima M, Kojima S, Kondo N, Koseki H, Koyasu S, Krampitz S, Kubosaki A, Kwon AT, Laros JF, Lee W, Lennartsson A, Li K, Lilje B, Lipovich L, Mackay-Sim A, Manabe R, Mar JC, Marchand B, Mathelier A, Mejhert N, Meynert A, Mizuno Y, de Lima Morais DA, Morikawa H, Morimoto M, Moro K, Motakis E, Motohashi H, Mummery CL, Murata M, Nagao-Sato S, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nakazato K, van Nimwegen E, Ninomiya N, Nishiyori H, Noma S, Noma S, Noazaki T, Ogishima S, Ohkura N, Ohimiya H, Ohno H, Ohshima M, Okada-Hatakeyama M, Okazaki Y, Orlando V, Ovchinnikov DA, Pain A, Passier R, Patrikakis M, Persson H, Piazza S, Prendergast JG, Rackham OJ, Ramilowski JA, Rashid M, Ravasi T, Rizzu P, Roncador M, Roy S, Rye MB, Saijyo E, Sajantila A, Saka A, Sakaguchi S, Sakai M, Sato H, Savvi S, Saxena A, Schneider C, Schultes EA, Schulze-Tanzil GG, Schwegmann A, Sengstag T, Sheng G, Shimoji H, Shimoni Y, Shin JW, Simon C, Sugiyama D, Sugiyama T, Suzuki M, Suzuki N, Swoboda RK, 't Hoen PA, Tagami M, Takahashi N, Takai J, Tanaka H, Tatsukawa H, Tatum Z, Thompson M, Toyodo H, Toyoda T, Valen E, van de Wetering M, van den Berg LM, Verado R, Vijayan D, Vorontsov IE, Wasserman WW, Watanabe S, Wells CA, Winteringham LN, Wolvetang E, Wood EJ, Yamaguchi Y, Yamamoto M, Yoneda M, Yonekura Y, Yoshida S, Zabierowski SE, Zhang PG, Zhao X, Zucchelli S, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.

Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182.

14.

Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49.

Harjes J, Ryu T, Abdelmohsen UR, Moitinho-Silva L, Horn H, Ravasi T, Hentschel U.

Genome Announc. 2014 Mar 6;2(2). pii: e00160-14. doi: 10.1128/genomeA.00160-14.

15.

Quantitative proteomics study of larval settlement in the Barnacle Balanus amphitrite.

Chen ZF, Zhang H, Wang H, Matsumura K, Wong YH, Ravasi T, Qian PY.

PLoS One. 2014 Feb 13;9(2):e88744. doi: 10.1371/journal.pone.0088744. eCollection 2014.

16.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

17.

Proteomic changes between male and female worms of the polychaetous annelid Neanthes arenaceodentata before and after spawning.

Chandramouli KH, Ravasi T, Reish D, Qian PY.

PLoS One. 2013 Aug 30;8(8):e72990. doi: 10.1371/journal.pone.0072990. eCollection 2013.

18.

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.

Moitinho-Silva L, Bayer K, Cannistraci CV, Giles EC, Ryu T, Seridi L, Ravasi T, Hentschel U.

Mol Ecol. 2014 Mar;23(6):1348-63. doi: 10.1111/mec.12365. Epub 2013 Aug 20.

PMID:
23957633
19.

Exploitation of genetic interaction network topology for the prediction of epistatic behavior.

Alanis-Lobato G, Cannistraci CV, Ravasi T.

Genomics. 2013 Oct;102(4):202-8. doi: 10.1016/j.ygeno.2013.07.010. Epub 2013 Jul 25.

PMID:
23892246
20.

Proteomic and metabolomic profiles of marine Vibrio sp. 010 in response to an antifoulant challenge.

Chandramouli KH, Dash S, Zhang Y, Ravasi T, Qian PY.

Biofouling. 2013;29(7):789-802. doi: 10.1080/08927014.2013.805209. Epub 2013 Jul 4.

PMID:
23822634
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