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Results: 1 to 20 of 75

1.

The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions.

Mavromatis CH, Bokil NJ, Totsika M, Kakkanat A, Schaale K, Cannistraci CV, Ryu T, Beatson SA, Ulett GC, Schembri MA, Sweet MJ, Ravasi T.

Cell Microbiol. 2014 Nov 20. doi: 10.1111/cmi.12397. [Epub ahead of print]

PMID:
25410299
[PubMed - as supplied by publisher]
2.

GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater.

Bayer K, Moitinho-Silva L, Brümmer F, Cannistraci CV, Ravasi T, Hentschel U.

FEMS Microbiol Ecol. 2014 Dec;90(3):832-43. doi: 10.1111/1574-6941.12441. Epub 2014 Nov 10.

PMID:
25318900
[PubMed - in process]
3.

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development.

Wong YH, Ryu T, Seridi L, Ghosheh Y, Bougouffa S, Qian PY, Ravasi T.

Sci Rep. 2014 Oct 10;4:6534. doi: 10.1038/srep06534.

PMID:
25300304
[PubMed - in process]
Free PMC Article
4.

Dynamic epigenetic control of highly conserved noncoding elements.

Seridi L, Ryu T, Ravasi T.

PLoS One. 2014 Oct 7;9(10):e109326. doi: 10.1371/journal.pone.0109326. eCollection 2014.

PMID:
25289637
[PubMed - in process]
Free PMC Article
5.

Proteomic profiling during the pre-competent to competent transition of the biofouling polychaete Hydroides elegans.

Zhang Y, Sun J, Zhang H, Chandramouli KH, Xu Y, He LS, Ravasi T, Qian PY.

Biofouling. 2014 Sep;30(8):921-8. doi: 10.1080/08927014.2014.951341.

PMID:
25237770
[PubMed - in process]
6.

Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.

Moitinho-Silva L, Seridi L, Ryu T, Voolstra CR, Ravasi T, Hentschel U.

Environ Microbiol. 2014 Dec;16(12):3683-98. doi: 10.1111/1462-2920.12533. Epub 2014 Jul 9.

PMID:
24920529
[PubMed - in process]
7.

Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity.

Abdelmohsen UR, Yang C, Horn H, Hajjar D, Ravasi T, Hentschel U.

Mar Drugs. 2014 May 12;12(5):2771-89. doi: 10.3390/md12052771.

PMID:
24824024
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A promoter-level mammalian expression atlas.

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassman T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, Bertin N, Jørgensen M, Dimont E, Arner E, Schmidl C, Schaefer U, Medvedeva YA, Plessy C, Vitezic M, Severin J, Semple C, Ishizu Y, Young RS, Francescatto M, Alam I, Albanese D, Altschuler GM, Arakawa T, Archer JA, Arner P, Babina M, Rennie S, Balwierz PJ, Beckhouse AG, Pradhan-Bhatt S, Blake JA, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Burroughs AM, Califano A, Cannistraci CV, Carbajo D, Chen Y, Chierici M, Ciani Y, Clevers HC, Dalla E, Davis CA, Detmar M, Diehl AD, Dohi T, Drabløs F, Edge AS, Edinger M, Ekwall K, Endoh M, Enomoto H, Fagiolini M, Fairbairn L, Fang H, Farach-Carson MC, Faulkner GJ, Favorov AV, Fisher ME, Frith MC, Fujita R, Fukuda S, Furlanello C, Furino M, Furusawa J, Geijtenbeek TB, Gibson AP, Gingeras T, Goldowitz D, Gough J, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Harbers M, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto T, Herlyn M, Hitchens KJ, Ho Sui SJ, Hofmann OM, Hoof I, Hori F, Huminiecki L, Iida K, Ikawa T, Jankovic BR, Jia H, Joshi A, Jurman G, Kaczkowski B, Kai C, Kaida K, Kaiho A, Kajiyama K, Kanamori-Katayama M, Kasianov AS, Kasukawa T, Katayama S, Kato S, Kawaguchi S, Kawamoto H, Kawamura YI, Kawashima T, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klinken SP, Knox AJ, Kojima M, Kojima S, Kondo N, Koseki H, Koyasu S, Krampitz S, Kubosaki A, Kwon AT, Laros JF, Lee W, Lennartsson A, Li K, Lilje B, Lipovich L, Mackay-Sim A, Manabe R, Mar JC, Marchand B, Mathelier A, Mejhert N, Meynert A, Mizuno Y, de Lima Morais DA, Morikawa H, Morimoto M, Moro K, Motakis E, Motohashi H, Mummery CL, Murata M, Nagao-Sato S, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nakazato K, van Nimwegen E, Ninomiya N, Nishiyori H, Noma S, Noma S, Noazaki T, Ogishima S, Ohkura N, Ohimiya H, Ohno H, Ohshima M, Okada-Hatakeyama M, Okazaki Y, Orlando V, Ovchinnikov DA, Pain A, Passier R, Patrikakis M, Persson H, Piazza S, Prendergast JG, Rackham OJ, Ramilowski JA, Rashid M, Ravasi T, Rizzu P, Roncador M, Roy S, Rye MB, Saijyo E, Sajantila A, Saka A, Sakaguchi S, Sakai M, Sato H, Savvi S, Saxena A, Schneider C, Schultes EA, Schulze-Tanzil GG, Schwegmann A, Sengstag T, Sheng G, Shimoji H, Shimoni Y, Shin JW, Simon C, Sugiyama D, Sugiyama T, Suzuki M, Suzuki N, Swoboda RK, 't Hoen PA, Tagami M, Takahashi N, Takai J, Tanaka H, Tatsukawa H, Tatum Z, Thompson M, Toyodo H, Toyoda T, Valen E, van de Wetering M, van den Berg LM, Verado R, Vijayan D, Vorontsov IE, Wasserman WW, Watanabe S, Wells CA, Winteringham LN, Wolvetang E, Wood EJ, Yamaguchi Y, Yamamoto M, Yoneda M, Yonekura Y, Yoshida S, Zabierowski SE, Zhang PG, Zhao X, Zucchelli S, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.

Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182.

PMID:
24670764
[PubMed - indexed for MEDLINE]
9.

Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49.

Harjes J, Ryu T, Abdelmohsen UR, Moitinho-Silva L, Horn H, Ravasi T, Hentschel U.

Genome Announc. 2014 Mar 6;2(2). pii: e00160-14. doi: 10.1128/genomeA.00160-14.

PMID:
24604655
[PubMed]
Free PMC Article
10.

Quantitative proteomics study of larval settlement in the Barnacle Balanus amphitrite.

Chen ZF, Zhang H, Wang H, Matsumura K, Wong YH, Ravasi T, Qian PY.

PLoS One. 2014 Feb 13;9(2):e88744. doi: 10.1371/journal.pone.0088744. eCollection 2014.

PMID:
24551147
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

PMID:
24336862
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Proteomic changes between male and female worms of the polychaetous annelid Neanthes arenaceodentata before and after spawning.

Chandramouli KH, Ravasi T, Reish D, Qian PY.

PLoS One. 2013 Aug 30;8(8):e72990. doi: 10.1371/journal.pone.0072990. eCollection 2013.

PMID:
24023665
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.

Moitinho-Silva L, Bayer K, Cannistraci CV, Giles EC, Ryu T, Seridi L, Ravasi T, Hentschel U.

Mol Ecol. 2014 Mar;23(6):1348-63. doi: 10.1111/mec.12365. Epub 2013 Aug 20.

PMID:
23957633
[PubMed - indexed for MEDLINE]
14.

Exploitation of genetic interaction network topology for the prediction of epistatic behavior.

Alanis-Lobato G, Cannistraci CV, Ravasi T.

Genomics. 2013 Oct;102(4):202-8. doi: 10.1016/j.ygeno.2013.07.010. Epub 2013 Jul 25.

PMID:
23892246
[PubMed - indexed for MEDLINE]
15.

Proteomic and metabolomic profiles of marine Vibrio sp. 010 in response to an antifoulant challenge.

Chandramouli KH, Dash S, Zhang Y, Ravasi T, Qian PY.

Biofouling. 2013;29(7):789-802. doi: 10.1080/08927014.2013.805209. Epub 2013 Jul 4.

PMID:
23822634
[PubMed - indexed for MEDLINE]
16.

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding.

Cannistraci CV, Alanis-Lobato G, Ravasi T.

Bioinformatics. 2013 Jul 1;29(13):i199-209. doi: 10.1093/bioinformatics/btt208.

PMID:
23812985
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Questing for circadian dependence in ST-segment-elevation acute myocardial infarction: a multicentric and multiethnic study.

Ammirati E, Cristell N, Cianflone D, Vermi AC, Marenzi G, De Metrio M, Uren NG, Hu D, Ravasi T, Maseri A, Cannistraci CV.

Circ Res. 2013 May 10;112(10):e110-4. doi: 10.1161/CIRCRESAHA.112.300778.

PMID:
23661713
[PubMed]
Free Article
18.

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.

Cannistraci CV, Alanis-Lobato G, Ravasi T.

Sci Rep. 2013;3:1613. doi: 10.1038/srep01613.

PMID:
23563395
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies.

Cannistraci CV, Ogorevc J, Zorc M, Ravasi T, Dovc P, Kunej T.

BMC Med Genomics. 2013 Feb 14;6:5. doi: 10.1186/1755-8794-6-5.

PMID:
23410028
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcriptome and quantitative proteome analysis reveals molecular processes associated with larval metamorphosis in the polychaete Pseudopolydora vexillosa.

Chandramouli KH, Sun J, Mok FS, Liu L, Qiu JW, Ravasi T, Qian PY.

J Proteome Res. 2013 Mar 1;12(3):1344-58. doi: 10.1021/pr3010088. Epub 2013 Jan 29.

PMID:
23294167
[PubMed - indexed for MEDLINE]

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