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Items: 1 to 20 of 145

1.

Making sense of big data in health research: Towards an EU action plan.

Auffray C, Balling R, Barroso I, Bencze L, Benson M, Bergeron J, Bernal-Delgado E, Blomberg N, Bock C, Conesa A, Del Signore S, Delogne C, Devilee P, Di Meglio A, Eijkemans M, Flicek P, Graf N, Grimm V, Guchelaar HJ, Guo YK, Gut IG, Hanbury A, Hanif S, Hilgers RD, Honrado Á, Hose DR, Houwing-Duistermaat J, Hubbard T, Janacek SH, Karanikas H, Kievits T, Kohler M, Kremer A, Lanfear J, Lengauer T, Maes E, Meert T, Müller W, Nickel D, Oledzki P, Pedersen B, Petkovic M, Pliakos K, Rattray M, I Màs JR, Schneider R, Sengstag T, Serra-Picamal X, Spek W, Vaas LA, van Batenburg O, Vandelaer M, Varnai P, Villoslada P, Vizcaíno JA, Wubbe JP, Zanetti G.

Genome Med. 2016 Jun 23;8(1):71. doi: 10.1186/s13073-016-0323-y.

2.

Inferring the perturbation time from biological time course data.

Yang J, Penfold CA, Grant MR, Rattray M.

Bioinformatics. 2016 Jun 10. pii: btw329. [Epub ahead of print]

3.

Astrocytes Grown in Alvetex(®) Three Dimensional Scaffolds Retain a Non-reactive Phenotype.

Ugbode CI, Hirst WD, Rattray M.

Neurochem Res. 2016 Aug;41(8):1857-67. doi: 10.1007/s11064-016-1911-3. Epub 2016 Apr 21.

PMID:
27099962
4.

Neuronal-glial populations form functional networks in a biocompatible 3D scaffold.

Smith I, Haag M, Ugbode C, Tams D, Rattray M, Przyborski S, Bithell A, Whalley BJ.

Neurosci Lett. 2015 Nov 16;609:198-202. doi: 10.1016/j.neulet.2015.10.044. Epub 2015 Oct 19.

PMID:
26493605
5.

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays.

Honkela A, Peltonen J, Topa H, Charapitsa I, Matarese F, Grote K, Stunnenberg HG, Reid G, Lawrence ND, Rattray M.

Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13115-20. doi: 10.1073/pnas.1420404112. Epub 2015 Oct 5.

6.

Fast Nonparametric Clustering of Structured Time-Series.

Hensman J, Rattray M, Lawrence ND.

IEEE Trans Pattern Anal Mach Intell. 2015 Feb;37(2):383-93. doi: 10.1109/TPAMI.2014.2318711.

PMID:
26353249
7.

Fast and accurate approximate inference of transcript expression from RNA-seq data.

Hensman J, Papastamoulis P, Glaus P, Honkela A, Rattray M.

Bioinformatics. 2015 Dec 15;31(24):3881-9. doi: 10.1093/bioinformatics/btv483. Epub 2015 Aug 26.

8.

Distinguishing Asthma Phenotypes Using Machine Learning Approaches.

Howard R, Rattray M, Prosperi M, Custovic A.

Curr Allergy Asthma Rep. 2015 Jul;15(7):38. doi: 10.1007/s11882-015-0542-0. Review.

9.

Neuronal DNA damage response-associated dysregulation of signalling pathways and cholesterol metabolism at the earliest stages of Alzheimer-type pathology.

Simpson JE, Ince PG, Minett T, Matthews FE, Heath PR, Shaw PJ, Goodall E, Garwood CJ, Ratcliffe LE, Brayne C, Rattray M, Wharton SB; MRC Cognitive Function and Ageing Neuropathology Study Group.

Neuropathol Appl Neurobiol. 2016 Feb;42(2):167-79. doi: 10.1111/nan.12252. Epub 2015 Jul 7.

PMID:
26095650
10.

C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis.

Cooper-Knock J, Bury JJ, Heath PR, Wyles M, Higginbottom A, Gelsthorpe C, Highley JR, Hautbergue G, Rattray M, Kirby J, Shaw PJ.

PLoS One. 2015 May 27;10(5):e0127376. doi: 10.1371/journal.pone.0127376. eCollection 2015.

11.

Hoxa2 selectively enhances Meis binding to change a branchial arch ground state.

Amin S, Donaldson IJ, Zannino DA, Hensman J, Rattray M, Losa M, Spitz F, Ladam F, Sagerström C, Bobola N.

Dev Cell. 2015 Feb 9;32(3):265-77. doi: 10.1016/j.devcel.2014.12.024. Epub 2015 Jan 29.

12.

Elucidating the mechanisms of TDP-43 aggregation in a cellular model of motor neuron disease.

Hicks D, Rattray M.

Springerplus. 2015 Jun 12;4(Suppl 1):L23. doi: 10.1186/2193-1801-4-S1-L23. eCollection 2015. No abstract available.

14.

Relationship between genome and epigenome--challenges and requirements for future research.

Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C, Bongcam-Rudloff E, Bousquet J, Braun S, Bressac-de Paillerets B, Bussemakers M, Clarke L, Conesa A, Estivill X, Fazeli A, Grgurević N, Gut I, Heijmans BT, Hermouet S, Houwing-Duistermaat J, Iacobucci I, Ilaš J, Kandimalla R, Krauss-Etschmann S, Lasko P, Lehmann S, Lindroth A, Majdič G, Marcotte E, Martinelli G, Martinet N, Meyer E, Miceli C, Mills K, Moreno-Villanueva M, Morvan G, Nickel D, Niesler B, Nowacki M, Nowak J, Ossowski S, Pelizzola M, Pochet R, Potočnik U, Radwanska M, Raes J, Rattray M, Robinson MD, Roelen B, Sauer S, Schinzer D, Slagboom E, Spector T, Stunnenberg HG, Tiligada E, Torres-Padilla ME, Tsonaka R, Van Soom A, Vidaković M, Widschwendter M.

BMC Genomics. 2014 Jun 18;15:487. doi: 10.1186/1471-2164-15-487.

15.

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.

wa Maina C, Honkela A, Matarese F, Grote K, Stunnenberg HG, Reid G, Lawrence ND, Rattray M.

PLoS Comput Biol. 2014 May 15;10(5):e1003598. doi: 10.1371/journal.pcbi.1003598. eCollection 2014 May.

16.

Neuronal influences are necessary to produce mitochondrial co-localization with glutamate transporters in astrocytes.

Ugbode CI, Hirst WD, Rattray M.

J Neurochem. 2014 Sep;130(5):668-77. doi: 10.1111/jnc.12759. Epub 2014 Jun 16.

17.

Improved variational Bayes inference for transcript expression estimation.

Papastamoulis P, Hensman J, Glaus P, Rattray M.

Stat Appl Genet Mol Biol. 2014 Apr 1;13(2):203-16. doi: 10.1515/sagmb-2013-0054.

PMID:
24413218
18.

Age-related changes in physical fall risk factors: results from a 3 year follow-up of community dwelling older adults in Tasmania, Australia.

Bird ML, Pittaway JK, Cuisick I, Rattray M, Ahuja KD.

Int J Environ Res Public Health. 2013 Nov 11;10(11):5989-97. doi: 10.3390/ijerph10115989.

19.

Immunoablation of cells expressing the NG2 chondroitin sulphate proteoglycan.

Leoni G, Rattray M, Fulton D, Rivera A, Butt AM.

J Anat. 2014 Feb;224(2):216-27. doi: 10.1111/joa.12141. Epub 2013 Nov 20.

20.

Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters.

Hensman J, Lawrence ND, Rattray M.

BMC Bioinformatics. 2013 Aug 20;14:252. doi: 10.1186/1471-2105-14-252.

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