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Results: 1 to 20 of 50

1.

How accurate can genetic predictions be?

Dreyfuss JM, Levner D, Galagan JE, Church GM, Ramoni MF.

BMC Genomics. 2012 Jul 24;13:340. doi: 10.1186/1471-2164-13-340.

PMID:
22827772
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours?

Zollanvari A, Saccone NL, Bierut LJ, Ramoni MF, Alterovitz G.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:3573-6. doi: 10.1109/IEMBS.2011.6090596.

PMID:
22255111
[PubMed - indexed for MEDLINE]
3.

Glycosaminoglycans and glucose prevent apoptosis in 4-methylumbelliferone-treated human aortic smooth muscle cells.

Vigetti D, Rizzi M, Moretto P, Deleonibus S, Dreyfuss JM, Karousou E, Viola M, Clerici M, Hascall VC, Ramoni MF, De Luca G, Passi A.

J Biol Chem. 2011 Oct 7;286(40):34497-503. doi: 10.1074/jbc.M111.266312. Epub 2011 Jul 18.

PMID:
21768115
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Inferring cell cycle feedback regulation from gene expression data.

Ferrazzi F, Engel FB, Wu E, Moseman AP, Kohane IS, Bellazzi R, Ramoni MF.

J Biomed Inform. 2011 Aug;44(4):565-75. doi: 10.1016/j.jbi.2011.02.002. Epub 2011 Feb 16.

PMID:
21310265
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mapping transcription mechanisms from multimodal genomic data.

Chang HH, McGeachie M, Alterovitz G, Ramoni MF.

BMC Bioinformatics. 2010 Oct 28;11 Suppl 9:S2. doi: 10.1186/1471-2105-11-S9-S2.

PMID:
21044360
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Association of linear growth impairment in pediatric Crohn's disease and a known height locus: a pilot study.

Lee JJ, Essers JB, Kugathasan S, Escher JC, Lettre G, Butler JL, Stephens MC, Ramoni MF, Grand RJ, Hirschhorn J.

Ann Hum Genet. 2010 Nov;74(6):489-97. doi: 10.1111/j.1469-1809.2010.00606.x. Epub 2010 Sep 15.

PMID:
20846217
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A transcriptional network signature characterizes lung cancer subtypes.

Chang HH, Dreyfuss JM, Ramoni MF.

Cancer. 2011 Jan 15;117(2):353-60. doi: 10.1002/cncr.25592. Epub 2010 Sep 13.

PMID:
20839314
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide association for smoking cessation success in a trial of precessation nicotine replacement.

Uhl GR, Drgon T, Johnson C, Ramoni MF, Behm FM, Rose JE.

Mol Med. 2010 Nov-Dec;16(11-12):513-26. doi: 10.2119/molmed.2010.00052. Epub 2010 Aug 24.

PMID:
20811658
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A systems biology approach to modeling vibrio cholerae gene expression under virulence-inducing conditions.

Kanjilal S, Citorik R, LaRocque RC, Ramoni MF, Calderwood SB.

J Bacteriol. 2010 Sep;192(17):4300-10. doi: 10.1128/JB.00182-10. Epub 2010 Jul 2.

PMID:
20601467
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ontology engineering.

Alterovitz G, Xiang M, Hill DP, Lomax J, Liu J, Cherkassky M, Dreyfuss J, Mungall C, Harris MA, Dolan ME, Blake JA, Ramoni MF.

Nat Biotechnol. 2010 Feb;28(2):128-30. doi: 10.1038/nbt0210-128. No abstract available.

PMID:
20139945
[PubMed - indexed for MEDLINE]
11.

Integrative predictive model of coronary artery calcification in atherosclerosis.

McGeachie M, Ramoni RL, Mychaleckyj JC, Furie KL, Dreyfuss JM, Liu Y, Herrington D, Guo X, Lima JA, Post W, Rotter JI, Rich S, Sale M, Ramoni MF.

Circulation. 2009 Dec 15;120(24):2448-54. doi: 10.1161/CIRCULATIONAHA.109.865501. Epub .

PMID:
19948975
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Alterovitz G, Muso T, Ramoni MF.

Brief Bioinform. 2010 Jan;11(1):80-95. doi: 10.1093/bib/bbp054. Epub 2009 Nov 11. Review.

PMID:
19906839
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dynamic gene expression analysis links melanocyte growth arrest with nevogenesis.

Yang G, Thieu K, Tsai KY, Piris A, Udayakumar D, Njauw CN, Ramoni MF, Tsao H.

Cancer Res. 2009 Dec 1;69(23):9029-37. doi: 10.1158/0008-5472.CAN-09-0783. Epub 2009 Nov 10.

PMID:
19903842
[PubMed - indexed for MEDLINE]
Free Article
14.

Transcriptional network classifiers.

Chang HH, Ramoni MF.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S1. doi: 10.1186/1471-2105-10-S9-S1.

PMID:
19761563
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Predicting response to short-acting bronchodilator medication using Bayesian networks.

Himes BE, Wu AC, Duan QL, Klanderman B, Litonjua AA, Tantisira K, Ramoni MF, Weiss ST.

Pharmacogenomics. 2009 Sep;10(9):1393-412. doi: 10.2217/pgs.09.93.

PMID:
19761364
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Prediction of chronic obstructive pulmonary disease (COPD) in asthma patients using electronic medical records.

Himes BE, Dai Y, Kohane IS, Weiss ST, Ramoni MF.

J Am Med Inform Assoc. 2009 May-Jun;16(3):371-9. doi: 10.1197/jamia.M2846. Epub 2009 Mar 4.

PMID:
19261943
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A testable prognostic model of nicotine dependence.

Ramoni RB, Saccone NL, Hatsukami DK, Bierut LJ, Ramoni MF.

J Neurogenet. 2009;23(3):283-92. doi: 10.1080/01677060802572911. Epub 2009 Jan 31. Review.

PMID:
19184766
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Predictive genomics of cardioembolic stroke.

Ramoni RB, Himes BE, Sale MM, Furie KL, Ramoni MF.

Stroke. 2009 Mar;40(3 Suppl):S67-70. doi: 10.1161/STROKEAHA.108.533273. Epub 2008 Dec 8.

PMID:
19064790
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Characterization of patients who suffer asthma exacerbations using data extracted from electronic medical records.

Himes BE, Kohane IS, Ramoni MF, Weiss ST.

AMIA Annu Symp Proc. 2008 Nov 6:308-12.

PMID:
18999057
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR.

English SB, Shih SC, Ramoni MF, Smith LE, Butte AJ.

J Biomed Inform. 2009 Apr;42(2):287-95. doi: 10.1016/j.jbi.2008.08.009. Epub 2008 Aug 26.

PMID:
18790084
[PubMed - indexed for MEDLINE]
Free PMC Article

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