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Items: 1 to 20 of 68

1.

Gene and sample selection using T-score with sample selection.

Mundra PA, Rajapakse JC.

J Biomed Inform. 2016 Feb;59:31-41. doi: 10.1016/j.jbi.2015.11.003. Epub 2015 Nov 7.

PMID:
26556644
2.

Quantification of liver fibrosis via second harmonic imaging of the Glisson's capsule from liver surface.

Xu S, Kang CH, Gou X, Peng Q, Yan J, Zhuo S, Cheng CL, He Y, Kang Y, Xia W, So PT, Welsch R, Rajapakse JC, Yu H.

J Biophotonics. 2016 Apr;9(4):351-63. doi: 10.1002/jbio.201500001. Epub 2015 Jul 1.

PMID:
26131709
3.

Aging exacerbates damage and delays repair of alveolar epithelia following influenza viral pneumonia.

Yin L, Zheng D, Limmon GV, Leung NH, Xu S, Rajapakse JC, Yu H, Chow VT, Chen J.

Respir Res. 2014 Sep 30;15:116. doi: 10.1186/s12931-014-0116-z.

4.

Identification of a new export signal in Plasmodium yoelii: identification of a new exportome.

Siau A, Huang X, Yam XY, Bob NS, Sun H, Rajapakse JC, Renia L, Preiser PR.

Cell Microbiol. 2014 May;16(5):673-86. doi: 10.1111/cmi.12293. Epub 2014 Apr 4.

PMID:
24636637
5.

qFibrosis: a fully-quantitative innovative method incorporating histological features to facilitate accurate fibrosis scoring in animal model and chronic hepatitis B patients.

Xu S, Wang Y, Tai DC, Wang S, Cheng CL, Peng Q, Yan J, Chen Y, Sun J, Liang X, Zhu Y, Rajapakse JC, Welsch RE, So PT, Wee A, Hou J, Yu H.

J Hepatol. 2014 Aug;61(2):260-9. doi: 10.1016/j.jhep.2014.02.015. Epub 2014 Feb 26.

6.

Extracting rate changes in transcriptional regulation from MEDLINE abstracts.

Liu W, Miao K, Li G, Chang K, Zheng J, Rajapakse JC.

BMC Bioinformatics. 2014;15 Suppl 2:S4. doi: 10.1186/1471-2105-15-S2-S4. Epub 2014 Jan 24.

7.

Multiclass gene selection using Pareto-fronts.

Rajapakse JC, Mundra PA.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):87-97. doi: 10.1109/TCBB.2013.1.

PMID:
23702546
8.

Spatiotemporal quantification of cell dynamics in the lung following influenza virus infection.

Yin L, Xu S, Cheng J, Zheng D, Limmon GV, Leung NH, Rajapakse JC, Chow VT, Chen J, Yu H.

J Biomed Opt. 2013 Apr;18(4):046001. doi: 10.1117/1.JBO.18.4.046001.

PMID:
23545853
9.

Serum proteome and cytokine analysis in a longitudinal cohort of adults with primary dengue infection reveals predictive markers of DHF.

Kumar Y, Liang C, Bo Z, Rajapakse JC, Ooi EE, Tannenbaum SR.

PLoS Negl Trop Dis. 2012;6(11):e1887. doi: 10.1371/journal.pntd.0001887. Epub 2012 Nov 29.

10.

Neutrophils infected with highly virulent influenza H3N2 virus exhibit augmented early cell death and rapid induction of type I interferon signaling pathways.

Ivan FX, Tan KS, Phoon MC, Engelward BP, Welsch RE, Rajapakse JC, Chow VT.

Genomics. 2013 Feb;101(2):101-12. doi: 10.1016/j.ygeno.2012.11.008. Epub 2012 Nov 27.

11.

Stability of building gene regulatory networks with sparse autoregressive models.

Rajapakse JC, Mundra PA.

BMC Bioinformatics. 2011;12 Suppl 13:S17. doi: 10.1186/1471-2105-12-S13-S17. Epub 2011 Nov 30.

12.

Correlation of cell membrane dynamics and cell motility.

Veronika M, Welsch R, Ng A, Matsudaira P, Rajapakse JC.

BMC Bioinformatics. 2011;12 Suppl 13:S19. doi: 10.1186/1471-2105-12-S13-S19. Epub 2011 Nov 30.

13.

Features for cells and nuclei classification.

Liu S, Mundra PA, Rajapakse JC.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:6601-4. doi: 10.1109/IEMBS.2011.6091628.

PMID:
22255852
14.

Estimation of the population of neutrophils induced to differentiate from the MPRO mouse promyelocytic cell line.

Ivan FX, Welsch RE, Chow VT, Rajapakse JC.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:6001-4. doi: 10.1109/IEMBS.2011.6091483.

PMID:
22255707
15.

Staging tissues with conditional random fields.

Rajapakse JC, Liu S.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:5128-31. doi: 10.1109/IEMBS.2011.6091270.

PMID:
22255493
16.

Improving signal-to-noise ratio of structured light microscopy based on photon reassignment.

Singh VR, Choi H, Yew EY, Bhattacharya D, Yuan L, Sheppard CJ, Rajapakse JC, Barbastathis G, So PT.

Biomed Opt Express. 2012 Jan 1;3(1):206-14. doi: 10.1364/BOE.3.000206. Epub 2011 Dec 22.

17.

Differential pulmonary transcriptomic profiles in murine lungs infected with low and highly virulent influenza H3N2 viruses reveal dysregulation of TREM1 signaling, cytokines, and chemokines.

Ivan FX, Rajapakse JC, Welsch RE, Rozen SG, Narasaraju T, Xiong GM, Engelward BP, Chow VT.

Funct Integr Genomics. 2012 Mar;12(1):105-17. doi: 10.1007/s10142-011-0247-y. Epub 2011 Aug 28.

PMID:
21874528
18.

Tree-structured algorithm for long weak motif discovery.

Sun HQ, Low MY, Hsu WJ, Tan CW, Rajapakse JC.

Bioinformatics. 2011 Oct 1;27(19):2641-7. doi: 10.1093/bioinformatics/btr459. Epub 2011 Aug 5.

19.

Levodopa and the feedback process on set-shifting in Parkinson's disease.

Au WL, Zhou J, Palmes P, Sitoh YY, Tan LC, Rajapakse JC.

Hum Brain Mapp. 2012 Jan;33(1):27-39. doi: 10.1002/hbm.21187. Epub 2011 Mar 24.

PMID:
21438075
20.

Toward better understanding of protein secondary structure: extracting prediction rules.

Nguyen MN, Zurada JM, Rajapakse JC.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):858-64. doi: 10.1109/TCBB.2010.16.

PMID:
21393657
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