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Results: 1 to 20 of 57

1.

Recurrent alterations of TNFAIP3 (A20) in T-cell large granular lymphocytic leukemia.

Johansson P, Bergmann A, Rahmann S, Wohlers I, Scholtysik R, Przekopowitz M, Seifert M, Tschurtschenthaler G, Webersinke G, Jäger U, Siebert R, Klein-Hitpass L, Dührsen U, Dürig J, Küppers R.

Int J Cancer. 2015 Jul 21. doi: 10.1002/ijc.29697. [Epub ahead of print]

PMID:
26199174
2.

An online peak extraction algorithm for ion mobility spectrometry data.

Kopczynski D, Rahmann S.

Algorithms Mol Biol. 2015 May 13;10:17. doi: 10.1186/s13015-015-0045-5. eCollection 2015.

3.

Mutational dynamics between primary and relapse neuroblastomas.

Schramm A, Köster J, Assenov Y, Althoff K, Peifer M, Mahlow E, Odersky A, Beisser D, Ernst C, Henssen AG, Stephan H, Schröder C, Heukamp L, Engesser A, Kahlert Y, Theissen J, Hero B, Roels F, Altmüller J, Nürnberg P, Astrahantseff K, Gloeckner C, De Preter K, Plass C, Lee S, Lode HN, Henrich KO, Gartlgruber M, Speleman F, Schmezer P, Westermann F, Rahmann S, Fischer M, Eggert A, Schulte JH.

Nat Genet. 2015 Jun 29. doi: 10.1038/ng.3349. [Epub ahead of print]

PMID:
26121086
4.

N6-adenosine methylation in MiRNAs.

Berulava T, Rahmann S, Rademacher K, Klein-Hitpass L, Horsthemke B.

PLoS One. 2015 Feb 27;10(2):e0118438. doi: 10.1371/journal.pone.0118438. eCollection 2015.

5.

Massively parallel read mapping on GPUs with the q-group index and PEANUT.

Köster J, Rahmann S.

PeerJ. 2014 Sep 30;2:e606. doi: 10.7717/peerj.606. eCollection 2014.

6.

Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure.

Boenigk J, Beisser D, Zimmermann S, Bock C, Jakobi J, Grabner D, Groβmann L, Rahmann S, Barcikowski S, Sures B.

PLoS One. 2014 Apr 22;9(4):e95340. doi: 10.1371/journal.pone.0095340. eCollection 2014.

7.

Supratentorial ependymomas of childhood carry C11orf95-RELA fusions leading to pathological activation of the NF-κB signaling pathway.

Pietsch T, Wohlers I, Goschzik T, Dreschmann V, Denkhaus D, Dörner E, Rahmann S, Klein-Hitpass L.

Acta Neuropathol. 2014 Apr;127(4):609-11. doi: 10.1007/s00401-014-1264-4. Epub 2014 Feb 22. No abstract available.

PMID:
24562983
8.

A modular computational framework for automated peak extraction from ion mobility spectra.

D'Addario M, Kopczynski D, Baumbach JI, Rahmann S.

BMC Bioinformatics. 2014 Jan 22;15:25. doi: 10.1186/1471-2105-15-25.

9.

A comprehensive molecular study on Coffin-Siris and Nicolaides-Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling.

Wieczorek D, Bögershausen N, Beleggia F, Steiner-Haldenstätt S, Pohl E, Li Y, Milz E, Martin M, Thiele H, Altmüller J, Alanay Y, Kayserili H, Klein-Hitpass L, Böhringer S, Wollstein A, Albrecht B, Boduroglu K, Caliebe A, Chrzanowska K, Cogulu O, Cristofoli F, Czeschik JC, Devriendt K, Dotti MT, Elcioglu N, Gener B, Goecke TO, Krajewska-Walasek M, Guillén-Navarro E, Hayek J, Houge G, Kilic E, Simsek-Kiper PÖ, López-González V, Kuechler A, Lyonnet S, Mari F, Marozza A, Mathieu Dramard M, Mikat B, Morin G, Morice-Picard F, Ozkinay F, Rauch A, Renieri A, Tinschert S, Utine GE, Vilain C, Vivarelli R, Zweier C, Nürnberg P, Rahmann S, Vermeesch J, Lüdecke HJ, Zeschnigk M, Wollnik B.

Hum Mol Genet. 2013 Dec 20;22(25):5121-35. doi: 10.1093/hmg/ddt366. Epub 2013 Aug 1.

10.

Oto-facial syndrome and esophageal atresia, intellectual disability and zygomatic anomalies - expanding the phenotypes associated with EFTUD2 mutations.

Voigt C, Mégarbané A, Neveling K, Czeschik JC, Albrecht B, Callewaert B, von Deimling F, Hehr A, Falkenberg Smeland M, König R, Kuechler A, Marcelis C, Puiu M, Reardon W, Riise Stensland HM, Schweiger B, Steehouwer M, Teller C, Martin M, Rahmann S, Hehr U, Brunner HG, Lüdecke HJ, Wieczorek D.

Orphanet J Rare Dis. 2013 Jul 24;8:110. doi: 10.1186/1750-1172-8-110.

11.

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.

Martin M, Maßhöfer L, Temming P, Rahmann S, Metz C, Bornfeld N, van de Nes J, Klein-Hitpass L, Hinnebusch AG, Horsthemke B, Lohmann DR, Zeschnigk M.

Nat Genet. 2013 Aug;45(8):933-6. doi: 10.1038/ng.2674. Epub 2013 Jun 23.

12.

Discovering motifs that induce sequencing errors.

Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T.

BMC Bioinformatics. 2013;14 Suppl 5:S1. doi: 10.1186/1471-2105-14-S5-S1. Epub 2013 Apr 10.

13.

Clinical and mutation data in 12 patients with the clinical diagnosis of Nager syndrome.

Czeschik JC, Voigt C, Alanay Y, Albrecht B, Avci S, Fitzpatrick D, Goudie DR, Hehr U, Hoogeboom AJ, Kayserili H, Simsek-Kiper PO, Klein-Hitpass L, Kuechler A, López-González V, Martin M, Rahmann S, Schweiger B, Splitt M, Wollnik B, Lüdecke HJ, Zeschnigk M, Wieczorek D.

Hum Genet. 2013 Aug;132(8):885-98. doi: 10.1007/s00439-013-1295-2. Epub 2013 Apr 9.

PMID:
23568615
14.

Peak detection method evaluation for ion mobility spectrometry by using machine learning approaches.

Hauschild AC, Kopczynski D, D'Addario M, Baumbach JI, Rahmann S, Baumbach J.

Metabolites. 2013 Apr 16;3(2):277-93. doi: 10.3390/metabo3020277.

15.

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data.

Rahmann S, Martin M, Schulte JH, Köster J, Marschall T, Schramm A.

Methods. 2013 Jan;59(1):154-63. doi: 10.1016/j.ymeth.2012.10.005. Epub 2012 Oct 23.

PMID:
23098880
16.

Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome.

Schramm A, Schowe B, Fielitz K, Heilmann M, Martin M, Marschall T, Köster J, Vandesompele J, Vermeulen J, de Preter K, Koster J, Versteeg R, Noguera R, Speleman F, Rahmann S, Eggert A, Morik K, Schulte JH.

Br J Cancer. 2012 Oct 9;107(8):1409-17. doi: 10.1038/bjc.2012.391.

17.

Snakemake--a scalable bioinformatics workflow engine.

Köster J, Rahmann S.

Bioinformatics. 2012 Oct 1;28(19):2520-2. Epub 2012 Aug 20.

18.

Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma.

Schramm A, Köster J, Marschall T, Martin M, Schwermer M, Fielitz K, Büchel G, Barann M, Esser D, Rosenstiel P, Rahmann S, Eggert A, Schulte JH.

Int J Cancer. 2013 Feb 1;132(3):E106-15. doi: 10.1002/ijc.27787. Epub 2012 Sep 26.

PMID:
22907398
19.

Probabilistic arithmetic automata and their applications.

Marschall T, Herms I, Kaltenbach HM, Rahmann S.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1737-50.

PMID:
22868683
20.

Efficiently mining protein interaction dependencies from large text corpora.

Köster J, Zamir E, Rahmann S.

Integr Biol (Camb). 2012 Jul;4(7):805-12. doi: 10.1039/c2ib00126h. Epub 2012 Jun 15.

PMID:
22706334
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