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Results: 1 to 20 of 52

1.

Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure.

Boenigk J, Beisser D, Zimmermann S, Bock C, Jakobi J, Grabner D, Groβmann L, Rahmann S, Barcikowski S, Sures B.

PLoS One. 2014 Apr 22;9(4):e95340. doi: 10.1371/journal.pone.0095340. eCollection 2014.

PMID:
24755991
[PubMed - in process]
Free PMC Article
2.

Supratentorial ependymomas of childhood carry C11orf95-RELA fusions leading to pathological activation of the NF-κB signaling pathway.

Pietsch T, Wohlers I, Goschzik T, Dreschmann V, Denkhaus D, Dörner E, Rahmann S, Klein-Hitpass L.

Acta Neuropathol. 2014 Apr;127(4):609-11. doi: 10.1007/s00401-014-1264-4. Epub 2014 Feb 22. No abstract available.

PMID:
24562983
[PubMed - in process]
3.

A modular computational framework for automated peak extraction from ion mobility spectra.

D'Addario M, Kopczynski D, Baumbach JI, Rahmann S.

BMC Bioinformatics. 2014 Jan 22;15:25. doi: 10.1186/1471-2105-15-25.

PMID:
24450533
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A comprehensive molecular study on Coffin-Siris and Nicolaides-Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling.

Wieczorek D, Bögershausen N, Beleggia F, Steiner-Haldenstätt S, Pohl E, Li Y, Milz E, Martin M, Thiele H, Altmüller J, Alanay Y, Kayserili H, Klein-Hitpass L, Böhringer S, Wollstein A, Albrecht B, Boduroglu K, Caliebe A, Chrzanowska K, Cogulu O, Cristofoli F, Czeschik JC, Devriendt K, Dotti MT, Elcioglu N, Gener B, Goecke TO, Krajewska-Walasek M, Guillén-Navarro E, Hayek J, Houge G, Kilic E, Simsek-Kiper PÖ, López-González V, Kuechler A, Lyonnet S, Mari F, Marozza A, Mathieu Dramard M, Mikat B, Morin G, Morice-Picard F, Ozkinay F, Rauch A, Renieri A, Tinschert S, Utine GE, Vilain C, Vivarelli R, Zweier C, Nürnberg P, Rahmann S, Vermeesch J, Lüdecke HJ, Zeschnigk M, Wollnik B.

Hum Mol Genet. 2013 Dec 20;22(25):5121-35. doi: 10.1093/hmg/ddt366. Epub 2013 Aug 1.

PMID:
23906836
[PubMed - indexed for MEDLINE]
5.

Oto-facial syndrome and esophageal atresia, intellectual disability and zygomatic anomalies - expanding the phenotypes associated with EFTUD2 mutations.

Voigt C, Mégarbané A, Neveling K, Czeschik JC, Albrecht B, Callewaert B, von Deimling F, Hehr A, Falkenberg Smeland M, König R, Kuechler A, Marcelis C, Puiu M, Reardon W, Riise Stensland HM, Schweiger B, Steehouwer M, Teller C, Martin M, Rahmann S, Hehr U, Brunner HG, Lüdecke HJ, Wieczorek D.

Orphanet J Rare Dis. 2013 Jul 24;8:110. doi: 10.1186/1750-1172-8-110.

PMID:
23879989
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.

Martin M, Maßhöfer L, Temming P, Rahmann S, Metz C, Bornfeld N, van de Nes J, Klein-Hitpass L, Hinnebusch AG, Horsthemke B, Lohmann DR, Zeschnigk M.

Nat Genet. 2013 Aug;45(8):933-6. doi: 10.1038/ng.2674. Epub 2013 Jun 23.

PMID:
23793026
[PubMed - indexed for MEDLINE]
7.

Discovering motifs that induce sequencing errors.

Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T.

BMC Bioinformatics. 2013;14 Suppl 5:S1. doi: 10.1186/1471-2105-14-S5-S1. Epub 2013 Apr 10.

PMID:
23735080
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Clinical and mutation data in 12 patients with the clinical diagnosis of Nager syndrome.

Czeschik JC, Voigt C, Alanay Y, Albrecht B, Avci S, Fitzpatrick D, Goudie DR, Hehr U, Hoogeboom AJ, Kayserili H, Simsek-Kiper PO, Klein-Hitpass L, Kuechler A, López-González V, Martin M, Rahmann S, Schweiger B, Splitt M, Wollnik B, Lüdecke HJ, Zeschnigk M, Wieczorek D.

Hum Genet. 2013 Aug;132(8):885-98. doi: 10.1007/s00439-013-1295-2. Epub 2013 Apr 9.

PMID:
23568615
[PubMed - indexed for MEDLINE]
9.

Peak detection method evaluation for ion mobility spectrometry by using machine learning approaches.

Hauschild AC, Kopczynski D, D'Addario M, Baumbach JI, Rahmann S, Baumbach J.

Metabolites. 2013 Apr 16;3(2):277-93. doi: 10.3390/metabo3020277.

PMID:
24957992
[PubMed]
Free PMC Article
10.

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data.

Rahmann S, Martin M, Schulte JH, Köster J, Marschall T, Schramm A.

Methods. 2013 Jan;59(1):154-63. doi: 10.1016/j.ymeth.2012.10.005. Epub 2012 Oct 23.

PMID:
23098880
[PubMed - indexed for MEDLINE]
11.

Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome.

Schramm A, Schowe B, Fielitz K, Heilmann M, Martin M, Marschall T, Köster J, Vandesompele J, Vermeulen J, de Preter K, Koster J, Versteeg R, Noguera R, Speleman F, Rahmann S, Eggert A, Morik K, Schulte JH.

Br J Cancer. 2012 Oct 9;107(8):1409-17. doi: 10.1038/bjc.2012.391.

PMID:
23047593
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Snakemake--a scalable bioinformatics workflow engine.

Köster J, Rahmann S.

Bioinformatics. 2012 Oct 1;28(19):2520-2. Epub 2012 Aug 20.

PMID:
22908215
[PubMed - indexed for MEDLINE]
Free Article
13.

Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma.

Schramm A, Köster J, Marschall T, Martin M, Schwermer M, Fielitz K, Büchel G, Barann M, Esser D, Rosenstiel P, Rahmann S, Eggert A, Schulte JH.

Int J Cancer. 2013 Feb 1;132(3):E106-15. doi: 10.1002/ijc.27787. Epub 2012 Sep 26.

PMID:
22907398
[PubMed - indexed for MEDLINE]
14.

Probabilistic arithmetic automata and their applications.

Marschall T, Herms I, Kaltenbach HM, Rahmann S.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1737-50.

PMID:
22868683
[PubMed - indexed for MEDLINE]
15.

Efficiently mining protein interaction dependencies from large text corpora.

Köster J, Zamir E, Rahmann S.

Integr Biol (Camb). 2012 Jul;4(7):805-12. doi: 10.1039/c2ib00126h. Epub 2012 Jun 15.

PMID:
22706334
[PubMed - indexed for MEDLINE]
16.

Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling.

Wolfsheimer S, Herms I, Rahmann S, Hartmann AK.

BMC Bioinformatics. 2011 Feb 3;12:47. doi: 10.1186/1471-2105-12-47.

PMID:
21291566
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis.

Friedrich T, Rahmann S, Weigel W, Rabsch W, Fruth A, Ron E, Gunzer F, Dandekar T, Hacker J, Müller T, Dobrindt U.

BMC Genomics. 2010 Oct 21;11:591. doi: 10.1186/1471-2164-11-591.

PMID:
20964857
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Partitioning biological data with transitivity clustering.

Wittkop T, Emig D, Lange S, Rahmann S, Albrecht M, Morris JH, Böcker S, Stoye J, Baumbach J.

Nat Methods. 2010 Jun;7(6):419-20. doi: 10.1038/nmeth0610-419. No abstract available.

PMID:
20508635
[PubMed - indexed for MEDLINE]
19.

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma.

Schulte JH, Marschall T, Martin M, Rosenstiel P, Mestdagh P, Schlierf S, Thor T, Vandesompele J, Eggert A, Schreiber S, Rahmann S, Schramm A.

Nucleic Acids Res. 2010 Sep;38(17):5919-28. doi: 10.1093/nar/gkq342. Epub 2010 May 13.

PMID:
20466808
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Efficient online transcription factor binding site adjustment by integrating transitive graph projection with MoRAine 2.0.

Wittkop T, Rahmann S, Baumbach J.

J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-117.

PMID:
20375458
[PubMed - indexed for MEDLINE]

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