Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 75

1.

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD.

Nat Biotechnol. 2014 Jul 6. doi: 10.1038/nbt.2939. [Epub ahead of print]

PMID:
24997787
[PubMed - as supplied by publisher]
2.

Relationship between genome and epigenome - challenges and requirements for future research.

Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C, Bongcam-Rudloff E, Bousquet J, Braun S, Paillerets BB, Bussemakers M, Clarke L, Conesa A, Estivill X, Fazeli A, Grgurević N, Gut I, Heijmans BT, Hermouet S, Houwing-Duistermaat J, Iacobucci I, Ilaš J, Kandimalla R, Krauss-Etschmann S, Lasko P, Lehmann S, Lindroth A, Majdič G, Marcotte E, Martinelli G, Martinet N, Meyer E, Miceli C, Mills K, Moreno-Villanueva M, Morvan G, Nickel D, Niesler B, Nowacki M, Nowak J, Ossowski S, Pelizzola M, Pochet R, Potočnik U, Radwanska M, Raes J, Rattray M, Robinson MD, Roelen B, Sauer S, Schinzer D, Slagboom E, Spector T, Stunnenberg HG, Tiligada E, Torres-Padilla ME, Tsonaka R, Soom AV, Vidaković M, Widschwendter M.

BMC Genomics. 2014 Jun 18;15:487. doi: 10.1186/1471-2164-15-487.

PMID:
24942464
[PubMed - in process]
Free PMC Article
3.

The skin microbiome of caspase-14-deficient mice shows mild dysbiosis.

Kubica M, Hildebrand F, Brinkman BM, Goossens D, Del Favero J, Vercammen K, Cornelis P, Schröder JM, Vandenabeele P, Raes J, Declercq W.

Exp Dermatol. 2014 May 26. doi: 10.1111/exd.12458. [Epub ahead of print]

PMID:
24863253
[PubMed - as supplied by publisher]
4.

Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines.

Ye L, Matthijs S, Bodilis J, Hildebrand F, Raes J, Cornelis P.

Biometals. 2014 Apr 23. [Epub ahead of print]

PMID:
24756978
[PubMed - as supplied by publisher]
5.

Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype.

Brinkman BM, Becker A, Ayiseh RB, Hildebrand F, Raes J, Huys G, Vandenabeele P.

Inflamm Bowel Dis. 2013 Nov;19(12):2560-7. doi: 10.1097/MIB.0b013e3182a8759a.

PMID:
24105395
[PubMed - indexed for MEDLINE]
6.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2013 Aug 18. doi: 10.1111/1462-2920.12250. [Epub ahead of print]

PMID:
24102695
[PubMed - as supplied by publisher]
7.

Richness of human gut microbiome correlates with metabolic markers.

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O.

Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.

PMID:
23985870
[PubMed - indexed for MEDLINE]
8.

A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies.

Ye L, Ballet S, Hildebrand F, Laus G, Guillemyn K, Raes J, Matthijs S, Martins J, Cornelis P.

Biometals. 2013 Aug;26(4):561-75. doi: 10.1007/s10534-013-9653-z. Epub 2013 Jul 23.

PMID:
23877277
[PubMed - indexed for MEDLINE]
9.

Induction of bone loss by pathobiont-mediated Nod1 signaling in the oral cavity.

Jiao Y, Darzi Y, Tawaratsumida K, Marchesan JT, Hasegawa M, Moon H, Chen GY, Núñez G, Giannobile WV, Raes J, Inohara N.

Cell Host Microbe. 2013 May 15;13(5):595-601. doi: 10.1016/j.chom.2013.04.005.

PMID:
23684310
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.

Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H.

ISME J. 2013 Sep;7(9):1678-95. doi: 10.1038/ismej.2013.59. Epub 2013 Apr 11.

PMID:
23575371
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Translating the human microbiome.

Brown J, de Vos WM, DiStefano PS, Doré J, Huttenhower C, Knight R, Lawley TD, Raes J, Turnbaugh P.

Nat Biotechnol. 2013 Apr;31(4):304-8. doi: 10.1038/nbt.2543. No abstract available.

PMID:
23563424
[PubMed - indexed for MEDLINE]
12.

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice.

Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, Liston A, Raes J.

Genome Biol. 2013 Jan 24;14(1):R4. [Epub ahead of print]

PMID:
23347395
[PubMed - as supplied by publisher]
Free PMC Article
13.

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.

Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK.

PLoS One. 2012;7(11):e49138. doi: 10.1371/journal.pone.0049138. Epub 2012 Nov 28.

PMID:
23209564
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The chemical interactome space between the human host and the genetically defined gut metabotypes.

Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G.

ISME J. 2013 Apr;7(4):730-42. doi: 10.1038/ismej.2012.141. Epub 2012 Nov 22.

PMID:
23178670
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A metagenome-wide association study of gut microbiota in type 2 diabetes.

Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang M, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, LeChatelier E, Renault P, Pons N, Batto JM, Zhang Z, Chen H, Yang R, Zheng W, Li S, Yang H, Wang J, Ehrlich SD, Nielsen R, Pedersen O, Kristiansen K, Wang J.

Nature. 2012 Oct 4;490(7418):55-60. doi: 10.1038/nature11450. Epub 2012 Sep 26.

PMID:
23023125
[PubMed - indexed for MEDLINE]
16.

A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens).

Hildebrand F, Ebersbach T, Nielsen HB, Li X, Sonne SB, Bertalan M, Dimitrov P, Madsen L, Qin J, Wang J, Raes J, Kristiansen K, Licht TR.

BMC Genomics. 2012 Sep 28;13:514. doi: 10.1186/1471-2164-13-514.

PMID:
23020652
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Microbial co-occurrence relationships in the human microbiome.

Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C.

PLoS Comput Biol. 2012;8(7):e1002606. doi: 10.1371/journal.pcbi.1002606. Epub 2012 Jul 12.

PMID:
22807668
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Microbial interactions: from networks to models.

Faust K, Raes J.

Nat Rev Microbiol. 2012 Jul 16;10(8):538-50. doi: 10.1038/nrmicro2832. Review.

PMID:
22796884
[PubMed - indexed for MEDLINE]
19.

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.

Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R.

Genome Res. 2012 Oct;22(10):1974-84. doi: 10.1101/gr.138198.112. Epub 2012 Jun 4.

PMID:
22665442
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P.

Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13.

PMID:
22569339
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk