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Results: 1 to 20 of 81

1.

Intestinal Microbiota And Diet in IBS: Causes, Consequences, or Epiphenomena?

Rajilić-Stojanović M, Jonkers DM, Salonen A, Hanevik K, Raes J, Jalanka J, de Vos WM, Manichanh C, Golic N, Enck P, Philippou E, Iraqi FA, Clarke G, Spiller RC, Penders J.

Am J Gastroenterol. 2015 Feb;110(2):278-287. doi: 10.1038/ajg.2014.427. Epub 2015 Jan 27. Review.

PMID:
25623659
[PubMed - as supplied by publisher]
Free PMC Article
2.

Commensal microbiota influence systemic autoimmune responses.

Van Praet JT, Donovan E, Vanassche I, Drennan MB, Windels F, Dendooven A, Allais L, Cuvelier CA, van de Loo F, Norris PS, Kruglov AA, Nedospasov SA, Rabot S, Tito R, Raes J, Gaboriau-Routhiau V, Cerf-Bensussan N, Van de Wiele T, Eberl G, Ware CF, Elewaut D.

EMBO J. 2015 Feb 12;34(4):466-74. doi: 10.15252/embj.201489966. Epub 2015 Jan 19.

PMID:
25599993
[PubMed - in process]
3.

How informative is the mouse for human gut microbiota research?

Nguyen TL, Vieira-Silva S, Liston A, Raes J.

Dis Model Mech. 2015 Jan;8(1):1-16. doi: 10.1242/dmm.017400.

PMID:
25561744
[PubMed - in process]
Free PMC Article
4.

CATCh, an Ensemble Classifier for Chimera Detection in 16S rRNA Sequencing Studies.

Mysara M, Saeys Y, Leys N, Raes J, Monsieurs P.

Appl Environ Microbiol. 2015 Mar 1;81(5):1573-84. doi: 10.1128/AEM.02896-14. Epub 2014 Dec 19.

PMID:
25527546
[PubMed - in process]
5.

A20 controls intestinal homeostasis through cell-specific activities.

Vereecke L, Vieira-Silva S, Billiet T, van Es JH, Mc Guire C, Slowicka K, Sze M, van den Born M, De Hertogh G, Clevers H, Raes J, Rutgeerts P, Vermeire S, Beyaert R, van Loo G.

Nat Commun. 2014 Sep 30;5:5103. doi: 10.1038/ncomms6103.

PMID:
25267258
[PubMed - in process]
6.

The gut microbiome - a new target for understanding, diagnosing and treating disease.

Raes J.

Arch Public Health. 2014 Jun 6;72(Suppl 1 Proceedings of the 4th Belgian Nutrition Society):K3. doi: 10.1186/2049-3258-72-S1-K3. eCollection 2014. No abstract available.

PMID:
25057356
[PubMed]
Free PMC Article
7.

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium.

Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6.

PMID:
24997787
[PubMed - in process]
8.

Relationship between genome and epigenome--challenges and requirements for future research.

Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C, Bongcam-Rudloff E, Bousquet J, Braun S, Bressac-de Paillerets B, Bussemakers M, Clarke L, Conesa A, Estivill X, Fazeli A, Grgurević N, Gut I, Heijmans BT, Hermouet S, Houwing-Duistermaat J, Iacobucci I, Ilaš J, Kandimalla R, Krauss-Etschmann S, Lasko P, Lehmann S, Lindroth A, Majdič G, Marcotte E, Martinelli G, Martinet N, Meyer E, Miceli C, Mills K, Moreno-Villanueva M, Morvan G, Nickel D, Niesler B, Nowacki M, Nowak J, Ossowski S, Pelizzola M, Pochet R, Potočnik U, Radwanska M, Raes J, Rattray M, Robinson MD, Roelen B, Sauer S, Schinzer D, Slagboom E, Spector T, Stunnenberg HG, Tiligada E, Torres-Padilla ME, Tsonaka R, Van Soom A, Vidaković M, Widschwendter M.

BMC Genomics. 2014 Jun 18;15:487. doi: 10.1186/1471-2164-15-487.

PMID:
24942464
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The skin microbiome of caspase-14-deficient mice shows mild dysbiosis.

Kubica M, Hildebrand F, Brinkman BM, Goossens D, Del Favero J, Vercammen K, Cornelis P, Schröder JM, Vandenabeele P, Raes J, Declercq W.

Exp Dermatol. 2014 Aug;23(8):561-7. doi: 10.1111/exd.12458. Epub 2014 Jul 16.

PMID:
24863253
[PubMed - in process]
10.

Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines.

Ye L, Matthijs S, Bodilis J, Hildebrand F, Raes J, Cornelis P.

Biometals. 2014 Aug;27(4):633-44. doi: 10.1007/s10534-014-9734-7. Epub 2014 Apr 23.

PMID:
24756978
[PubMed - in process]
11.

Gut microbiota affects sensitivity to acute DSS-induced colitis independently of host genotype.

Brinkman BM, Becker A, Ayiseh RB, Hildebrand F, Raes J, Huys G, Vandenabeele P.

Inflamm Bowel Dis. 2013 Nov;19(12):2560-7. doi: 10.1097/MIB.0b013e3182a8759a.

PMID:
24105395
[PubMed - indexed for MEDLINE]
12.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2014 Sep;16(9):2659-71. doi: 10.1111/1462-2920.12250. Epub 2013 Sep 18.

PMID:
24102695
[PubMed - in process]
13.

Richness of human gut microbiome correlates with metabolic markers.

Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O.

Nature. 2013 Aug 29;500(7464):541-6. doi: 10.1038/nature12506.

PMID:
23985870
[PubMed - indexed for MEDLINE]
14.

A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies.

Ye L, Ballet S, Hildebrand F, Laus G, Guillemyn K, Raes J, Matthijs S, Martins J, Cornelis P.

Biometals. 2013 Aug;26(4):561-75. doi: 10.1007/s10534-013-9653-z. Epub 2013 Jul 23.

PMID:
23877277
[PubMed - indexed for MEDLINE]
15.

Induction of bone loss by pathobiont-mediated Nod1 signaling in the oral cavity.

Jiao Y, Darzi Y, Tawaratsumida K, Marchesan JT, Hasegawa M, Moon H, Chen GY, Núñez G, Giannobile WV, Raes J, Inohara N.

Cell Host Microbe. 2013 May 15;13(5):595-601. doi: 10.1016/j.chom.2013.04.005.

PMID:
23684310
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.

Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H.

ISME J. 2013 Sep;7(9):1678-95. doi: 10.1038/ismej.2013.59. Epub 2013 Apr 11.

PMID:
23575371
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Translating the human microbiome.

Brown J, de Vos WM, DiStefano PS, Doré J, Huttenhower C, Knight R, Lawley TD, Raes J, Turnbaugh P.

Nat Biotechnol. 2013 Apr;31(4):304-8. doi: 10.1038/nbt.2543. No abstract available.

PMID:
23563424
[PubMed - indexed for MEDLINE]
18.

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice.

Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, Liston A, Raes J.

Genome Biol. 2013 Jan 24;14(1):R4. doi: 10.1186/gb-2013-14-1-r4.

PMID:
23347395
[PubMed - in process]
Free PMC Article
19.

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.

Erickson AR, Cantarel BL, Lamendella R, Darzi Y, Mongodin EF, Pan C, Shah M, Halfvarson J, Tysk C, Henrissat B, Raes J, Verberkmoes NC, Fraser CM, Hettich RL, Jansson JK.

PLoS One. 2012;7(11):e49138. doi: 10.1371/journal.pone.0049138. Epub 2012 Nov 28.

PMID:
23209564
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The chemical interactome space between the human host and the genetically defined gut metabotypes.

Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G.

ISME J. 2013 Apr;7(4):730-42. doi: 10.1038/ismej.2012.141. Epub 2012 Nov 22.

PMID:
23178670
[PubMed - indexed for MEDLINE]
Free PMC Article
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