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Results: 16

1.

Molecular Mechanisms and Design Principles for Promiscuous Inhibitors to Avoid Drug Resistance: Lessons Learned from HIV-1 Protease Inhibition.

Shen Y, Radhakrishnan ML, Tidor B.

Proteins. 2014 Nov 19. doi: 10.1002/prot.24730. [Epub ahead of print]

PMID:
25410041
[PubMed - as supplied by publisher]
2.

The effect of macromolecular crowding on the electrostatic component of barnase-barstar binding: a computational, implicit solvent-based study.

Qi HW, Nakka P, Chen C, Radhakrishnan ML.

PLoS One. 2014 Jun 10;9(6):e98618. doi: 10.1371/journal.pone.0098618. eCollection 2014.

PMID:
24915485
[PubMed - in process]
Free PMC Article
3.

Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding.

Kreienkamp AB, Liu LY, Minkara MS, Knepley MG, Bardhan JP, Radhakrishnan ML.

Mol Based Math Biol. 2013 Jun;1:124-150.

PMID:
24466561
[PubMed]
Free PMC Article
4.

A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes.

Doherty KM, Nakka P, King BM, Rhee SY, Holmes SP, Shafer RW, Radhakrishnan ML.

BMC Bioinformatics. 2011 Dec 15;12:477. doi: 10.1186/1471-2105-12-477.

PMID:
22172090
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Multiple drugs and multiple targets: an analysis of the electrostatic determinants of binding between non-nucleoside HIV-1 reverse transcriptase inhibitors and variants of HIV-1 RT.

Minkara MS, Davis PH, Radhakrishnan ML.

Proteins. 2012 Feb;80(2):573-90. doi: 10.1002/prot.23221. Epub 2011 Nov 17.

PMID:
22095671
[PubMed - in process]
6.

Cellular level models as tools for cytokine design.

Radhakrishnan ML, Tidor B.

Biotechnol Prog. 2010 Jul-Aug;26(4):919-37. doi: 10.1002/btpr.387.

PMID:
20568274
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Symmetric signaling by an asymmetric 1 erythropoietin: 2 erythropoietin receptor complex.

Zhang YL, Radhakrishnan ML, Lu X, Gross AW, Tidor B, Lodish HF.

Mol Cell. 2009 Jan 30;33(2):266-74. doi: 10.1016/j.molcel.2008.11.026.

PMID:
19187767
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A dual receptor crosstalk model of G-protein-coupled signal transduction.

Flaherty P, Radhakrishnan ML, Dinh T, Rebres RA, Roach TI, Jordan MI, Arkin AP.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000185. doi: 10.1371/journal.pcbi.1000185.

PMID:
18818727
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Optimal drug cocktail design: methods for targeting molecular ensembles and insights from theoretical model systems.

Radhakrishnan ML, Tidor B.

J Chem Inf Model. 2008 May;48(5):1055-73. doi: 10.1021/ci700452r. Epub 2008 May 27.

PMID:
18505239
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Specificity in molecular design: a physical framework for probing the determinants of binding specificity and promiscuity in a biological environment.

Radhakrishnan ML, Tidor B.

J Phys Chem B. 2007 Nov 29;111(47):13419-35. Epub 2007 Nov 3.

PMID:
17979267
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Poem: Party of 5.55 * 10(1) mol/L.

Radhakrishnan ML.

Biochem Mol Biol Educ. 2006 Jan;34(1):34. doi: 10.1002/bmb.2006.49403401034. No abstract available.

PMID:
21638629
[PubMed]
12.

Poem: Organic matchmaker.

Radhakrishnan ML.

Biochem Mol Biol Educ. 2005 Nov;33(6):419. doi: 10.1002/bmb.2005.49403306419. No abstract available.

PMID:
21638614
[PubMed]
13.

Poem: Ethanol, my children!

Radhakrishnan ML.

Biochem Mol Biol Educ. 2005 Sep;33(5):356. doi: 10.1002/bmb.2005.49403305356. No abstract available.

PMID:
21638598
[PubMed]
14.

Defining Cdk5 ligand chemical space with small molecule inhibitors of tau phosphorylation.

Ahn JS, Radhakrishnan ML, Mapelli M, Choi S, Tidor B, Cuny GD, Musacchio A, Yeh LA, Kosik KS.

Chem Biol. 2005 Jul;12(7):811-23.

PMID:
16039528
[PubMed - indexed for MEDLINE]
Free Article
15.

Poem: PC arrghh!

Radhakrishnan ML.

Biochem Mol Biol Educ. 2005 May;33(3):218. doi: 10.1002/bmb.2005.494033032433. No abstract available.

PMID:
21638582
[PubMed]
16.

Poem: Finding amino.

Radhakrishnan ML.

Biochem Mol Biol Educ. 2005 Mar;33(2):111. doi: 10.1002/bmb.2005.494033022431. No abstract available.

PMID:
21638555
[PubMed]

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