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Results: 1 to 20 of 149

1.

Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection.

De Vlaminck I, Valantine HA, Snyder TM, Strehl C, Cohen G, Luikart H, Neff NF, Okamoto J, Bernstein D, Weisshaar D, Quake SR, Khush KK.

Sci Transl Med. 2014 Jun 18;6(241):241ra77. doi: 10.1126/scitranslmed.3007803.

PMID:
24944192
[PubMed - in process]
2.

Linkage disequilibrium and signatures of positive selection around LINE-1 retrotransposons in the human genome.

Kuhn A, Ong YM, Cheng CY, Wong TY, Quake SR, Burkholder WF.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8131-6. doi: 10.1073/pnas.1401532111. Epub 2014 May 20.

PMID:
24847061
[PubMed - in process]
Free PMC Article
3.

Noninvasive in vivo monitoring of tissue-specific global gene expression in humans.

Koh W, Pan W, Gawad C, Fan HC, Kerchner GA, Wyss-Coray T, Blumenfeld YJ, El-Sayed YY, Quake SR.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7361-6. doi: 10.1073/pnas.1405528111. Epub 2014 May 5.

PMID:
24799715
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.

Treutlein B, Brownfield DG, Wu AR, Neff NF, Mantalas GL, Espinoza FH, Desai TJ, Krasnow MA, Quake SR.

Nature. 2014 May 15;509(7500):371-5. doi: 10.1038/nature13173. Epub 2014 Apr 13.

PMID:
24739965
[PubMed - in process]
5.

The phylogenetic and geographic structure of Y-chromosome haplogroup R1a.

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R.

Eur J Hum Genet. 2014 Mar 26. doi: 10.1038/ejhg.2014.50. [Epub ahead of print]

PMID:
24667786
[PubMed - as supplied by publisher]
6.

Mapping of protein-protein interactions of E. coli RNA polymerase with microfluidic mechanical trapping.

Bates SR, Quake SR.

PLoS One. 2014 Mar 18;9(3):e91542. doi: 10.1371/journal.pone.0091542. eCollection 2014.

PMID:
24643045
[PubMed - in process]
Free PMC Article
7.

Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing.

Treutlein B, Gokce O, Quake SR, Südhof TC.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):E1291-9. doi: 10.1073/pnas.1403244111. Epub 2014 Mar 17.

PMID:
24639501
[PubMed - indexed for MEDLINE]
8.

Dissecting genomic diversity, one cell at a time.

Blainey PC, Quake SR.

Nat Methods. 2014 Jan;11(1):19-21. No abstract available. Erratum in: Nat Methods. 2014 Mar;11(3):349.

PMID:
24524132
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The promise and challenge of high-throughput sequencing of the antibody repertoire.

Georgiou G, Ippolito GC, Beausang J, Busse CE, Wardemann H, Quake SR.

Nat Biotechnol. 2014 Feb;32(2):158-68. doi: 10.1038/nbt.2782. Epub 2014 Jan 19.

PMID:
24441474
[PubMed - in process]
10.

Noninvasive prenatal diagnosis in a fetus at risk for methylmalonic acidemia.

Gu W, Koh W, Blumenfeld YJ, El-Sayed YY, Hudgins L, Hintz SR, Quake SR.

Genet Med. 2014 Jul;16(7):564-7. doi: 10.1038/gim.2013.194. Epub 2014 Jan 9.

PMID:
24406457
[PubMed - in process]
11.

Temporal response of the human virome to immunosuppression and antiviral therapy.

De Vlaminck I, Khush KK, Strehl C, Kohli B, Luikart H, Neff NF, Okamoto J, Snyder TM, Cornfield DN, Nicolls MR, Weill D, Bernstein D, Valantine HA, Quake SR.

Cell. 2013 Nov 21;155(5):1178-87. doi: 10.1016/j.cell.2013.10.034.

PMID:
24267896
[PubMed - indexed for MEDLINE]
12.

Quantitative assessment of single-cell RNA-sequencing methods.

Wu AR, Neff NF, Kalisky T, Dalerba P, Treutlein B, Rothenberg ME, Mburu FM, Mantalas GL, Sim S, Clarke MF, Quake SR.

Nat Methods. 2014 Jan;11(1):41-6. doi: 10.1038/nmeth.2694. Epub 2013 Oct 20.

PMID:
24141493
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Optofluidic cell selection from complex microbial communities for single-genome analysis.

Landry ZC, Giovanonni SJ, Quake SR, Blainey PC.

Methods Enzymol. 2013;531:61-90. doi: 10.1016/B978-0-12-407863-5.00004-6.

PMID:
24060116
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Single-cell DNA-methylation analysis reveals epigenetic chimerism in preimplantation embryos.

Lorthongpanich C, Cheow LF, Balu S, Quake SR, Knowles BB, Burkholder WF, Solter D, Messerschmidt DM.

Science. 2013 Sep 6;341(6150):1110-2. doi: 10.1126/science.1240617.

PMID:
24009393
[PubMed - indexed for MEDLINE]
15.

Genetic measurement of memory B-cell recall using antibody repertoire sequencing.

Vollmers C, Sit RV, Weinstein JA, Dekker CL, Quake SR.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13463-8. doi: 10.1073/pnas.1312146110. Epub 2013 Jul 29.

PMID:
23898164
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A microfluidic device for preparing next generation DNA sequencing libraries and for automating other laboratory protocols that require one or more column chromatography steps.

Tan SJ, Phan H, Gerry BM, Kuhn A, Hong LZ, Min Ong Y, Poon PS, Unger MA, Jones RC, Quake SR, Burkholder WF.

PLoS One. 2013 Jul 24;8(7):e64084. doi: 10.1371/journal.pone.0064084. Print 2013.

PMID:
23894273
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Identification of a colonial chordate histocompatibility gene.

Voskoboynik A, Newman AM, Corey DM, Sahoo D, Pushkarev D, Neff NF, Passarelli B, Koh W, Ishizuka KJ, Palmeri KJ, Dimov IK, Keasar C, Fan HC, Mantalas GL, Sinha R, Penland L, Quake SR, Weissman IL.

Science. 2013 Jul 26;341(6144):384-7. doi: 10.1126/science.1238036.

PMID:
23888037
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The genome sequence of the colonial chordate, Botryllus schlosseri.

Voskoboynik A, Neff NF, Sahoo D, Newman AM, Pushkarev D, Koh W, Passarelli B, Fan HC, Mantalas GL, Palmeri KJ, Ishizuka KJ, Gissi C, Griggio F, Ben-Shlomo R, Corey DM, Penland L, White RA, Weissman IL, Quake SR.

Elife (Cambridge). 2013 Jul 2;2:e00569. doi: 10.7554/eLife.00569.

PMID:
23840927
[PubMed]
Free PMC Article
19.

Correlation of gene expression and genome mutation in single B-cells.

Weinstein JA, Zeng X, Chien YH, Quake SR.

PLoS One. 2013 Jun 28;8(6):e67624. doi: 10.1371/journal.pone.0067624. Print 2013.

PMID:
23840752
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.

Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP.

Nat Commun. 2013;4:1854. doi: 10.1038/ncomms2884.

PMID:
23673639
[PubMed - indexed for MEDLINE]
Free PMC Article

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