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[Functions of lncRNA in development and diseases].

Mathieu EL, Belhocine M, Dao LT, Puthier D, Spicuglia S.

Med Sci (Paris). 2014 Aug-Sep;30(8-9):790-6. doi: 10.1051/medsci/20143008018. Epub 2014 Sep 1. Review. French.


Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation.

Evangelista AF, Collares CV, Xavier DJ, Macedo C, Manoel-Caetano FS, Rassi DM, Foss-Freitas MC, Foss MC, Sakamoto-Hojo ET, Nguyen C, Puthier D, Passos GA, Donadi EA.

BMC Med Genomics. 2014 May 23;7:28. doi: 10.1186/1755-8794-7-28.


Drosophila microbiota modulates host metabolic gene expression via IMD/NF-κB signaling.

Erkosar B, Defaye A, Bozonnet N, Puthier D, Royet J, Leulier F.

PLoS One. 2014 Apr 14;9(4):e94729. doi: 10.1371/journal.pone.0094729. eCollection 2014. Erratum in: PLoS One. 2014 Jul;9(7):e104120. Erkosar Combe, Berra [corrected to Erkosar, Berra].


Divergent transcription is associated with promoters of transcriptional regulators.

Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S.

BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914.


Identifying common and specific microRNAs expressed in peripheral blood mononuclear cell of type 1, type 2, and gestational diabetes mellitus patients.

Collares CV, Evangelista AF, Xavier DJ, Rassi DM, Arns T, Foss-Freitas MC, Foss MC, Puthier D, Sakamoto-Hojo ET, Passos GA, Donadi EA.

BMC Res Notes. 2013 Nov 26;6:491. doi: 10.1186/1756-0500-6-491.


An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function.

Spicuglia S, Maqbool MA, Puthier D, Andrau JC.

Methods. 2013 Sep 1;63(1):3-17. doi: 10.1016/j.ymeth.2013.04.003. Epub 2013 Apr 15.


Gene expression profiles displayed by peripheral blood mononuclear cells from patients with type 2 diabetes mellitus focusing on biological processes implicated on the pathogenesis of the disease.

Manoel-Caetano FS, Xavier DJ, Evangelista AF, Takahashi P, Collares CV, Puthier D, Foss-Freitas MC, Foss MC, Donadi EA, Passos GA, Sakamoto-Hojo ET.

Gene. 2012 Dec 15;511(2):151-60. doi: 10.1016/j.gene.2012.09.090. Epub 2012 Oct 2.


TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.

BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19.


An evaluation of the role of gene expression in the prediction and diagnosis of ventilator-associated pneumonia.

Textoris J, Loriod B, Benayoun L, Gourraud PA, Puthier D, Albanèse J, Mantz J, Martin C, Nguyen C, Leone M.

Anesthesiology. 2011 Aug;115(2):344-52. doi: 10.1097/ALN.0b013e318225ba26.


Platelets alter gene expression profile in human brain endothelial cells in an in vitro model of cerebral malaria.

Barbier M, Faille D, Loriod B, Textoris J, Camus C, Puthier D, Flori L, Wassmer SC, Victorero G, Alessi MC, Fusaï T, Nguyen C, Grau GE, Rihet P.

PLoS One. 2011;6(5):e19651. doi: 10.1371/journal.pone.0019651. Epub 2011 May 16.


TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database.

Lopez F, Textoris J, Bergon A, Didier G, Remy E, Granjeaud S, Imbert J, Nguyen C, Puthier D.

PLoS One. 2008;3(12):e4001. doi: 10.1371/journal.pone.0004001. Epub 2008 Dec 23.


Entropy measures quantify global splicing disorders in cancer.

Ritchie W, Granjeaud S, Puthier D, Gautheret D.

PLoS Comput Biol. 2008 Mar 14;4(3):e1000011. doi: 10.1371/journal.pcbi.1000011.


Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice.

Delahaye NF, Coltel N, Puthier D, Barbier M, Benech P, Joly F, Iraqi FA, Grau GE, Nguyen C, Rihet P.

BMC Genomics. 2007 Dec 6;8:452.


CD8 T cell help for innate antitumor immunity.

Shanker A, Verdeil G, Buferne M, Inderberg-Suso EM, Puthier D, Joly F, Nguyen C, Leserman L, Auphan-Anezin N, Schmitt-Verhulst AM.

J Immunol. 2007 Nov 15;179(10):6651-62.


High cytotoxic and specific migratory potencies of senescent CD8+ CD57+ cells in HIV-infected and uninfected individuals.

Le Priol Y, Puthier D, Lécureuil C, Combadière C, Debré P, Nguyen C, Combadière B.

J Immunol. 2006 Oct 15;177(8):5145-54.


Thrombin-induced endothelial microparticle generation: identification of a novel pathway involving ROCK-II activation by caspase-2.

Sapet C, Simoncini S, Loriod B, Puthier D, Sampol J, Nguyen C, Dignat-George F, Anfosso F.

Blood. 2006 Sep 15;108(6):1868-76. Epub 2006 May 23.


STAT5-mediated signals sustain a TCR-initiated gene expression program toward differentiation of CD8 T cell effectors.

Verdeil G, Puthier D, Nguyen C, Schmitt-Verhulst AM, Auphan-Anezin N.

J Immunol. 2006 Apr 15;176(8):4834-42.


Gene-expression profiling discriminates between cerebral malaria (CM)-susceptible mice and CM-resistant mice.

Delahaye NF, Coltel N, Puthier D, Flori L, Houlgatte R, Iraqi FA, Nguyen C, Grau GE, Rihet P.

J Infect Dis. 2006 Jan 15;193(2):312-21. Epub 2005 Dec 5.


Modulation of interleukin-7 receptor expression characterizes differentiation of CD8 T cells specific for HIV, EBV and CMV.

Boutboul F, Puthier D, Appay V, Pellé O, Ait-Mohand H, Combadière B, Carcelain G, Katlama C, Rowland-Jones SL, Debré P, Nguyen C, Autran B.

AIDS. 2005 Nov 18;19(17):1981-6.


A general survey of thymocyte differentiation by transcriptional analysis of knockout mouse models.

Puthier D, Joly F, Irla M, Saade M, Victorero G, Loriod B, Nguyen C.

J Immunol. 2004 Nov 15;173(10):6109-18.

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