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Results: 1 to 20 of 44

1.

New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes.

Islam MA, Waller AS, Hug LA, Provart NJ, Edwards EA, Mahadevan R.

PLoS One. 2014 Apr 14;9(4):e94808. doi: 10.1371/journal.pone.0094808. eCollection 2014.

PMID:
24733489
[PubMed - in process]
Free PMC Article
2.

Bioinformatic tools in Arabidopsis research.

de Lucas M, Provart NJ, Brady SM.

Methods Mol Biol. 2014;1062:97-136. doi: 10.1007/978-1-62703-580-4_5.

PMID:
24057362
[PubMed - indexed for MEDLINE]
3.

RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions.

Champigny MJ, Sung WW, Catana V, Salwan R, Summers PS, Dudley SA, Provart NJ, Cameron RK, Golding GB, Weretilnyk EA.

BMC Genomics. 2013 Aug 28;14:578. doi: 10.1186/1471-2164-14-578.

PMID:
23984645
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Developmental transcriptional profiling reveals key insights into Triticeae reproductive development.

Tran F, Penniket C, Patel RV, Provart NJ, Laroche A, Rowland O, Robert LS.

Plant J. 2013 Jun;74(6):971-88. doi: 10.1111/tpj.12206. Epub 2013 May 11.

PMID:
23581995
[PubMed - indexed for MEDLINE]
5.

Incipient stem cell niche conversion in tissue culture: using a systems approach to probe early events in WUSCHEL-dependent conversion of lateral root primordia into shoot meristems.

Chatfield SP, Capron R, Severino A, Penttila PA, Alfred S, Nahal H, Provart NJ.

Plant J. 2013 Mar;73(5):798-813. doi: 10.1111/tpj.12085.

PMID:
23181633
[PubMed - indexed for MEDLINE]
6.

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species.

Patel RV, Nahal HK, Breit R, Provart NJ.

Plant J. 2012 Sep;71(6):1038-50. doi: 10.1111/j.1365-313X.2012.05055.x. Epub 2012 Jul 12.

PMID:
22607031
[PubMed - indexed for MEDLINE]
7.

The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis.

Lumba S, Tsuchiya Y, Delmas F, Hezky J, Provart NJ, Shi Lu Q, McCourt P, Gazzarrini S.

BMC Biol. 2012 Feb 20;10:8. doi: 10.1186/1741-7007-10-8.

PMID:
22348746
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature.

Chiu RS, Nahal H, Provart NJ, Gazzarrini S.

BMC Plant Biol. 2012 Jan 27;12:15. doi: 10.1186/1471-2229-12-15.

PMID:
22279962
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A predicted protein interactome for rice.

Ho CL, Wu Y, Shen HB, Provart NJ, Geisler M.

Rice (N Y). 2012 Jul 2;5(1):15. doi: 10.1186/1939-8433-5-15.

PMID:
24279740
[PubMed]
10.

The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome.

Maia J, Dekkers BJ, Provart NJ, Ligterink W, Hilhorst HW.

PLoS One. 2011;6(12):e29123. doi: 10.1371/journal.pone.0029123. Epub 2011 Dec 14.

PMID:
22195004
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MetaBase--the wiki-database of biological databases.

Bolser DM, Chibon PY, Palopoli N, Gong S, Jacob D, Del Angel VD, Swan D, Bassi S, González V, Suravajhala P, Hwang S, Romano P, Edwards R, Bishop B, Eargle J, Shtatland T, Provart NJ, Clements D, Renfro DP, Bhak D, Bhak J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1250-4. doi: 10.1093/nar/gkr1099. Epub 2011 Dec 1.

PMID:
22139927
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Changes in stomatal function and water use efficiency in potato plants with altered sucrolytic activity.

Antunes WC, Provart NJ, Williams TC, Loureiro ME.

Plant Cell Environ. 2012 Apr;35(4):747-59. doi: 10.1111/j.1365-3040.2011.02448.x. Epub 2011 Nov 23.

PMID:
21999376
[PubMed - indexed for MEDLINE]
13.

Seed bioinformatics.

Bassel GW, Holdsworth MJ, Provart NJ.

Methods Mol Biol. 2011;773:403-19. doi: 10.1007/978-1-61779-231-1_23.

PMID:
21898268
[PubMed - indexed for MEDLINE]
14.

Analysis of gene expression patterns during seed coat development in Arabidopsis.

Dean G, Cao Y, Xiang D, Provart NJ, Ramsay L, Ahad A, White R, Selvaraj G, Datla R, Haughn G.

Mol Plant. 2011 Nov;4(6):1074-91. doi: 10.1093/mp/ssr040. Epub 2011 Jun 7.

PMID:
21653281
[PubMed - indexed for MEDLINE]
15.

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions.

Bassel GW, Lan H, Glaab E, Gibbs DJ, Gerjets T, Krasnogor N, Bonner AJ, Holdsworth MJ, Provart NJ.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9709-14. doi: 10.1073/pnas.1100958108. Epub 2011 May 18.

PMID:
21593420
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Next-generation mapping of Arabidopsis genes.

Austin RS, Vidaurre D, Stamatiou G, Breit R, Provart NJ, Bonetta D, Zhang J, Fung P, Gong Y, Wang PW, McCourt P, Guttman DS.

Plant J. 2011 Aug;67(4):715-25. doi: 10.1111/j.1365-313X.2011.04619.x. Epub 2011 Jul 18.

PMID:
21518053
[PubMed - indexed for MEDLINE]
17.

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.

Xiong X, Song H, On T, Lochovsky L, Provart NJ, Parkinson J.

Bioinformatics. 2011 Mar 15;27(6):877-8. doi: 10.1093/bioinformatics/btr023. Epub 2011 Jan 19.

PMID:
21252074
[PubMed - indexed for MEDLINE]
Free Article
18.

ePlant and the 3D data display initiative: integrative systems biology on the world wide web.

Fucile G, Di Biase D, Nahal H, La G, Khodabandeh S, Chen Y, Easley K, Christendat D, Kelley L, Provart NJ.

PLoS One. 2011 Jan 10;6(1):e15237. doi: 10.1371/journal.pone.0015237.

PMID:
21249219
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

AtMetExpress development: a phytochemical atlas of Arabidopsis development.

Matsuda F, Hirai MY, Sasaki E, Akiyama K, Yonekura-Sakakibara K, Provart NJ, Sakurai T, Shimada Y, Saito K.

Plant Physiol. 2010 Feb;152(2):566-78. doi: 10.1104/pp.109.148031. Epub 2009 Dec 18.

PMID:
20023150
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats.

Usadel B, Obayashi T, Mutwil M, Giorgi FM, Bassel GW, Tanimoto M, Chow A, Steinhauser D, Persson S, Provart NJ.

Plant Cell Environ. 2009 Dec;32(12):1633-51. doi: 10.1111/j.1365-3040.2009.02040.x. Epub 2009 Aug 27. Review.

PMID:
19712066
[PubMed - indexed for MEDLINE]

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