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Results: 1 to 20 of 6408

1.

The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks.

Ibrahim ZM, Ngom A.

BMC Bioinformatics. 2015;16 Suppl 4:S3. doi: 10.1186/1471-2105-16-S4-S3. Epub 2015 Feb 23.

2.

On the packing density of the unbound protein-protein interaction interface and its implications in dynamics.

Lin JJ, Lin ZL, Hwang JK, Huang TT.

BMC Bioinformatics. 2015;16 Suppl 1:S7. doi: 10.1186/1471-2105-16-S1-S7. Epub 2015 Jan 21.

3.

Analysis of HIV-1 Gag protein interactions via biotin ligase tagging.

Ritchie C, Cylinder I, Platt EJ, Barklis E.

J Virol. 2015 Apr;89(7):3988-4001. doi: 10.1128/JVI.03584-14. Epub 2015 Jan 28.

PMID:
25631074
4.

In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.

Karumuri S, Bandopadhyay R.

Indian J Biochem Biophys. 2014 Oct;51(5):343-9.

PMID:
25630103
5.

Mapping the Interactions between the NS4B and NS3 proteins of dengue virus.

Zou J, Lee le T, Wang QY, Xie X, Lu S, Yau YH, Yuan Z, Geifman Shochat S, Kang C, Lescar J, Shi PY.

J Virol. 2015 Apr;89(7):3471-83. doi: 10.1128/JVI.03454-14. Epub 2015 Jan 14.

PMID:
25589636
6.

The yeast two-hybrid assay: still finding connections after 25 years.

Vidal M, Fields S.

Nat Methods. 2014 Dec;11(12):1203-6. No abstract available.

PMID:
25584376
7.

Identification and characterization of the binding site of the respiratory syncytial virus phosphoprotein to RNA-free nucleoprotein.

Galloux M, Gabiane G, Sourimant J, Richard CA, England P, Moudjou M, Aumont-Nicaise M, Fix J, Rameix-Welti MA, Eléouët JF.

J Virol. 2015 Apr;89(7):3484-96. doi: 10.1128/JVI.03666-14. Epub 2015 Jan 7.

PMID:
25568210
8.

Characterization of dengue virus NS4A and NS4B protein interaction.

Zou J, Xie X, Wang QY, Dong H, Lee MY, Kang C, Yuan Z, Shi PY.

J Virol. 2015 Apr;89(7):3455-70. doi: 10.1128/JVI.03453-14. Epub 2015 Jan 7.

PMID:
25568208
9.

[Comparative characteristic of the methods of protein antigens epitope mapping].

Halkin OIu.

Ukr Biochem J. 2014 Jul-Aug;86(4):164-77. Ukrainian.

PMID:
25509196
10.

Response to the comment on 'protein-protein binding affinity prediction from amino acid sequence'.

Yugandhar K, Gromiha MM.

Bioinformatics. 2015 Mar 15;31(6):978. doi: 10.1093/bioinformatics/btu821. Epub 2014 Dec 12. No abstract available.

PMID:
25505089
11.

First evidence for substrate channeling between proline catabolic enzymes: a validation of domain fusion analysis for predicting protein-protein interactions.

Sanyal N, Arentson BW, Luo M, Tanner JJ, Becker DF.

J Biol Chem. 2015 Jan 23;290(4):2225-34. doi: 10.1074/jbc.M114.625483. Epub 2014 Dec 9.

PMID:
25492892
12.

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set.

You ZH, Zhu L, Zheng CH, Yu HJ, Deng SP, Ji Z.

BMC Bioinformatics. 2014;15 Suppl 15:S9. doi: 10.1186/1471-2105-15-S15-S9. Epub 2014 Dec 3.

13.

An efficient protein complex mining algorithm based on Multistage Kernel Extension.

Shen X, Zhao Y, Li Y, He T, Yang J, Hu X.

BMC Bioinformatics. 2014;15 Suppl 12:S7. doi: 10.1186/1471-2105-15-S12-S7. Epub 2014 Nov 6.

14.

[Prediction and identification of T-cell epitopes in major group 3 allergen derived from Dermatophagoides farina].

Li N, Li CP, Diao JD, Zhao BB, Jiang YX.

Zhongguo Xue Xi Chong Bing Fang Zhi Za Zhi. 2014 Aug;26(4):415-9. Chinese.

PMID:
25434141
15.

A small unstructured region in Vibrio cholerae ToxT mediates the response to positive and negative effectors and ToxT proteolysis.

Thomson JJ, Plecha SC, Withey JH.

J Bacteriol. 2015 Feb;197(3):654-68. doi: 10.1128/JB.02068-14. Epub 2014 Nov 24.

PMID:
25422303
16.

Focal adhesion kinase is involved in rabies virus infection through its interaction with viral phosphoprotein P.

Fouquet B, Nikolic J, Larrous F, Bourhy H, Wirblich C, Lagaudrière-Gesbert C, Blondel D.

J Virol. 2015 Feb;89(3):1640-51. doi: 10.1128/JVI.02602-14. Epub 2014 Nov 19.

PMID:
25410852
17.

Structure of the meningococcal vaccine antigen NadA and epitope mapping of a bactericidal antibody.

Malito E, Biancucci M, Faleri A, Ferlenghi I, Scarselli M, Maruggi G, Lo Surdo P, Veggi D, Liguori A, Santini L, Bertoldi I, Petracca R, Marchi S, Romagnoli G, Cartocci E, Vercellino I, Savino S, Spraggon G, Norais N, Pizza M, Rappuoli R, Masignani V, Bottomley MJ.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17128-33. doi: 10.1073/pnas.1419686111. Epub 2014 Nov 17.

18.

New strategies for allergen T cell epitope identification: going beyond IgE.

Schulten V, Peters B, Sette A.

Int Arch Allergy Immunol. 2014;165(2):75-82. doi: 10.1159/000368406. Epub 2014 Nov 15. Review.

PMID:
25402674
19.

In silico prediction of physical protein interactions and characterization of interactome orphans.

Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, Maestro R, Jurisica I.

Nat Methods. 2015 Jan;12(1):79-84. doi: 10.1038/nmeth.3178. Epub 2014 Nov 17.

PMID:
25402006
20.

Comment on 'protein-protein binding affinity prediction from amino acid sequence'.

Moal IH, Fernández-Recio J.

Bioinformatics. 2015 Feb 15;31(4):614-5. doi: 10.1093/bioinformatics/btu682. Epub 2014 Oct 17. No abstract available.

PMID:
25381451
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