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Results: 1 to 20 of 35


Detection of circular permutations within protein structures using CE-CP.

Bliven SE, Bourne PE, Prlić A.

Bioinformatics. 2015 Apr 15;31(8):1316-8. doi: 10.1093/bioinformatics/btu823. Epub 2014 Dec 12.


The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.

Rose PW, Prlić A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK.

Nucleic Acids Res. 2015 Jan;43(Database issue):D345-56. doi: 10.1093/nar/gku1214. Epub 2014 Nov 26.


RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

Quinn GB, Bi C, Christie CH, Pang K, Prlić A, Nakane T, Zardecki C, Voigt M, Berman HM, Bourne PE, Rose PW.

Bioinformatics. 2015 Jan 1;31(1):126-7. doi: 10.1093/bioinformatics/btu596. Epub 2014 Sep 2.


Systematic detection of internal symmetry in proteins using CE-Symm.

Myers-Turnbull D, Bliven SE, Rose PW, Aziz ZK, Youkharibache P, Bourne PE, Prlić A.

J Mol Biol. 2014 May 29;426(11):2255-68. doi: 10.1016/j.jmb.2014.03.010. Epub 2014 Mar 26.


Trendspotting in the Protein Data Bank.

Berman HM, Coimbatore Narayanan B, Di Costanzo L, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prlić A, Rose PW, Shao C, Yang H, Young J, Zardecki C.

FEBS Lett. 2013 Apr 17;587(8):1036-45. doi: 10.1016/j.febslet.2012.12.029. Epub 2013 Jan 18. Review.


Ten simple rules for the open development of scientific software.

Prlić A, Procter JB.

PLoS Comput Biol. 2012;8(12):e1002802. doi: 10.1371/journal.pcbi.1002802. Epub 2012 Dec 6. No abstract available.


The RCSB Protein Data Bank: new resources for research and education.

Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, Berman HM, Bourne PE.

Nucleic Acids Res. 2013 Jan;41(Database issue):D475-82. doi: 10.1093/nar/gks1200. Epub 2012 Nov 27.


BioJava: an open-source framework for bioinformatics in 2012.

Prlić A, Yates A, Bliven SE, Rose PW, Jacobsen J, Troshin PV, Chapman M, Gao J, Koh CH, Foisy S, Holland R, Rimsa G, Heuer ML, Brandstätter-Müller H, Bourne PE, Willis S.

Bioinformatics. 2012 Oct 15;28(20):2693-5. doi: 10.1093/bioinformatics/bts494. Epub 2012 Aug 9.


Circular permutation in proteins.

Bliven S, Prlić A.

PLoS Comput Biol. 2012;8(3):e1002445. doi: 10.1371/journal.pcbi.1002445. Epub 2012 Mar 29. No abstract available.


The importance of thorough preoperative diagnostics of maxillary ameloblastoma: report of three cases.

Matijević M, Leović D, Popić B, Zubcić V, Kopić V, Prlić A, Siber S, Dinjar K.

Coll Antropol. 2010 Dec;34(4):1445-8.


Quality of life of patients after stroke in county Osijek-Baranya.

Prlić N, Kadojić D, Kadojić M, Gmajnić R, Prlić A.

Coll Antropol. 2010 Dec;34(4):1379-90.


Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.

Bluhm WF, Beran B, Bi C, Dimitropoulos D, Prlic A, Quinn GB, Rose PW, Shah C, Young J, Yukich B, Berman HM, Bourne PE.

Database (Oxford). 2011 Mar 7;2011:bar003. doi: 10.1093/database/bar003. Print 2011.


The RCSB Protein Data Bank: redesigned web site and web services.

Rose PW, Beran B, Bi C, Bluhm WF, Dimitropoulos D, Goodsell DS, Prlic A, Quesada M, Quinn GB, Westbrook JD, Young J, Yukich B, Zardecki C, Berman HM, Bourne PE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D392-401. doi: 10.1093/nar/gkq1021. Epub 2010 Oct 29.


Pre-calculated protein structure alignments at the RCSB PDB website.

Prlic A, Bliven S, Rose PW, Bluhm WF, Bizon C, Godzik A, Bourne PE.

Bioinformatics. 2010 Dec 1;26(23):2983-5. doi: 10.1093/bioinformatics/btq572. Epub 2010 Oct 10.


Integration of open access literature into the RCSB Protein Data Bank using BioLit.

Prlić A, Martinez MA, Dimitropoulos D, Beran B, Yukich BT, Rose PW, Bourne PE, Fink JL.

BMC Bioinformatics. 2010 Apr 29;11:220. doi: 10.1186/1471-2105-11-220.


Will widgets and semantic tagging change computational biology?

Bourne PE, Beran B, Bi C, Bluhm W, Dunbrack R, Prlić A, Quinn G, Rose P, Shah R, Tao W, Weitzner B, Yukich B.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000673. doi: 10.1371/journal.pcbi.1000673. No abstract available.


Regional pattern of smoking in Croatia.

Samardzić S, Marvinac GV, Prlić A.

Coll Antropol. 2009 Apr;33 Suppl 1:43-6.


Proportions in the upper lip-lower lip-chin area of the lower face as determined by photogrammetric method.

Anic-Milosevic S, Mestrovic S, Prlić A, Slaj M.

J Craniomaxillofac Surg. 2010 Mar;38(2):90-5. doi: 10.1016/j.jcms.2009.03.013. Epub 2009 May 17.


DASMI: exchanging, annotating and assessing molecular interaction data.

Blankenburg H, Finn RD, Prlić A, Jenkinson AM, Ramírez F, Emig D, Schelhorn SE, Büch J, Lengauer T, Albrecht M.

Bioinformatics. 2009 May 15;25(10):1321-8. doi: 10.1093/bioinformatics/btp142.


The Protein Feature Ontology: a tool for the unification of protein feature annotations.

Reeves GA, Eilbeck K, Magrane M, O'Donovan C, Montecchi-Palazzi L, Harris MA, Orchard S, Jimenez RC, Prlic A, Hubbard TJ, Hermjakob H, Thornton JM.

Bioinformatics. 2008 Dec 1;24(23):2767-72. doi: 10.1093/bioinformatics/btn528. Epub 2008 Oct 20.

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