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Results: 1 to 20 of 95

1.

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets.

Raj A, Stephens M, Pritchard JK.

Genetics. 2014 Apr 2;197(2):573-589. [Epub ahead of print]

PMID:
24700103
[PubMed - as supplied by publisher]
Free PMC Article
2.

The functional consequences of variation in transcription factor binding.

Cusanovich DA, Pavlovic B, Pritchard JK, Gilad Y.

PLoS Genet. 2014 Mar 6;10(3):e1004226. doi: 10.1371/journal.pgen.1004226. eCollection 2014 Mar.

PMID:
24603674
[PubMed - in process]
Free PMC Article
3.

Admixture facilitates genetic adaptations to high altitude in Tibet.

Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, Beall CM, Di Rienzo A.

Nat Commun. 2014;5:3281. doi: 10.1038/ncomms4281.

PMID:
24513612
[PubMed - in process]
4.

The deleterious mutation load is insensitive to recent population history.

Simons YB, Turchin MC, Pritchard JK, Sella G.

Nat Genet. 2014 Mar;46(3):220-4. doi: 10.1038/ng.2896. Epub 2014 Feb 9.

PMID:
24509481
[PubMed - indexed for MEDLINE]
5.

The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation.

Nalabothula N, McVicker G, Maiorano J, Martin R, Pritchard JK, Fondufe-Mittendorf YN.

BMC Genomics. 2014 Feb 1;15:92. doi: 10.1186/1471-2164-15-92.

PMID:
24484546
[PubMed - in process]
Free PMC Article
6.

Archaic humans: Four makes a party.

Birney E, Pritchard JK.

Nature. 2014 Jan 2;505(7481):32-4. doi: 10.1038/nature12847. Epub 2013 Dec 18. No abstract available.

PMID:
24352230
[PubMed - indexed for MEDLINE]
7.

Identification of genetic variants that affect histone modifications in human cells.

McVicker G, van de Geijn B, Degner JF, Cain CE, Banovich NE, Raj A, Lewellen N, Myrthil M, Gilad Y, Pritchard JK.

Science. 2013 Nov 8;342(6159):747-9. doi: 10.1126/science.1242429. Epub 2013 Oct 17.

PMID:
24136359
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Primate transcript and protein expression levels evolve under compensatory selection pressures.

Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y.

Science. 2013 Nov 29;342(6162):1100-4. doi: 10.1126/science.1242379. Epub 2013 Oct 17.

PMID:
24136357
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The genetic architecture of adaptations to high altitude in Ethiopia.

Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, Di Rienzo A.

PLoS Genet. 2012;8(12):e1003110. doi: 10.1371/journal.pgen.1003110. Epub 2012 Dec 6.

PMID:
23236293
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Controls of nucleosome positioning in the human genome.

Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK.

PLoS Genet. 2012;8(11):e1003036. doi: 10.1371/journal.pgen.1003036. Epub 2012 Nov 15.

PMID:
23166509
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Inference of population splits and mixtures from genome-wide allele frequency data.

Pickrell JK, Pritchard JK.

PLoS Genet. 2012;8(11):e1002967. doi: 10.1371/journal.pgen.1002967. Epub 2012 Nov 15.

PMID:
23166502
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.

Pai AA, Cain CE, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras JB, Degner JF, Gaffney DJ, Pickrell JK, Stephens M, Pritchard JK, Gilad Y.

PLoS Genet. 2012;8(10):e1003000. doi: 10.1371/journal.pgen.1003000. Epub 2012 Oct 11.

PMID:
23071454
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genomics: ENCODE explained.

Ecker JR, Bickmore WA, Barroso I, Pritchard JK, Gilad Y, Segal E.

Nature. 2012 Sep 6;489(7414):52-5. doi: 10.1038/489052a. No abstract available.

PMID:
22955614
[PubMed - indexed for MEDLINE]
14.

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, Singh H.

Cell. 2012 Jun 22;149(7):1474-87. doi: 10.1016/j.cell.2012.04.035.

PMID:
22726435
[PubMed - indexed for MEDLINE]
Free Article
15.

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

Pickrell JK, Gilad Y, Pritchard JK.

Science. 2012 Mar 16;335(6074):1302; author reply 1302. doi: 10.1126/science.1210484.

PMID:
22422963
[PubMed - indexed for MEDLINE]
Free Article
16.

Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data.

Veyrieras JB, Gaffney DJ, Pickrell JK, Gilad Y, Stephens M, Pritchard JK.

PLoS One. 2012;7(2):e30629. doi: 10.1371/journal.pone.0030629. Epub 2012 Feb 16.

PMID:
22359548
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A systematic survey of loss-of-function variants in human protein-coding genes.

MacArthur DG, Balasubramanian S, Frankish A, Huang N, Morris J, Walter K, Jostins L, Habegger L, Pickrell JK, Montgomery SB, Albers CA, Zhang ZD, Conrad DF, Lunter G, Zheng H, Ayub Q, DePristo MA, Banks E, Hu M, Handsaker RE, Rosenfeld JA, Fromer M, Jin M, Mu XJ, Khurana E, Ye K, Kay M, Saunders GI, Suner MM, Hunt T, Barnes IH, Amid C, Carvalho-Silva DR, Bignell AH, Snow C, Yngvadottir B, Bumpstead S, Cooper DN, Xue Y, Romero IG; 1000 Genomes Project Consortium, Wang J, Li Y, Gibbs RA, McCarroll SA, Dermitzakis ET, Pritchard JK, Barrett JC, Harrow J, Hurles ME, Gerstein MB, Tyler-Smith C.

Science. 2012 Feb 17;335(6070):823-8. doi: 10.1126/science.1215040. Erratum in: Science. 2012 Apr 20;336(6079):296.

PMID:
22344438
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DNase I sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808.

PMID:
22307276
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7.

PMID:
22293038
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, Gilad Y.

Genome Res. 2012 Apr;22(4):602-10. doi: 10.1101/gr.130468.111. Epub 2011 Dec 29.

PMID:
22207615
[PubMed - indexed for MEDLINE]
Free PMC Article

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