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Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.

Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme KL, Boutros PC, Caberlotto L, Caloian C, Campbell F, Chaibub Neto E, Chang YC, Chen B, Chen CY, Chien TY, Clark T, Das S, Davatzikos C, Deng J, Dillenberger D, Dobson RJ, Dong Q, Doshi J, Duma D, Errico R, Erus G, Everett E, Fardo DW, Friend SH, Fröhlich H, Gan J, St George-Hyslop P, Ghosh SS, Glaab E, Green RC, Guan Y, Hong MY, Huang C, Hwang J, Ibrahim J, Inglese P, Iyappan A, Jiang Q, Katsumata Y, Kauwe JS, Klein A, Kong D, Krause R, Lalonde E, Lauria M, Lee E, Lin X, Liu Z, Livingstone J, Logsdon BA, Lovestone S, Ma TW, Malhotra A, Mangravite LM, Maxwell TJ, Merrill E, Nagorski J, Namasivayam A, Narayan M, Naz M, Newhouse SJ, Norman TC, Nurtdinov RN, Oyang YJ, Pawitan Y, Peng S, Peters MA, Piccolo SR, Praveen P, Priami C, Sabelnykova VY, Senger P, Shen X, Simmons A, Sotiras A, Stolovitzky G, Tangaro S, Tateo A, Tung YA, Tustison NJ, Varol E, Vradenburg G, Weiner MW, Xiao G, Xie L, Xie Y, Xu J, Yang H, Zhan X, Zhou Y, Zhu F, Zhu H, Zhu S; Alzheimer's Disease Neuroimaging Initiative.

Alzheimers Dement. 2016 Apr 11. pii: S1552-5260(16)00081-9. doi: 10.1016/j.jalz.2016.02.006. [Epub ahead of print]


Efficient Constant-Time Complexity Algorithm for Stochastic Simulation of Large Reaction Networks.

Thanh VH, Zunino R, Priami C.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Feb 15. [Epub ahead of print]


A network analysis of cofactor-protein interactions for analyzing associations between human nutrition and diseases.

Scott-Boyer MP, Lacroix S, Scotti M, Morine MJ, Kaput J, Priami C.

Sci Rep. 2016 Jan 18;6:19633. doi: 10.1038/srep19633.


Systems biology approaches to study the molecular effects of caloric restriction and polyphenols on aging processes.

Lacroix S, Lauria M, Scott-Boyer MP, Marchetti L, Priami C, Caberlotto L.

Genes Nutr. 2015 Nov;10(6):58. doi: 10.1007/s12263-015-0508-9. Epub 2015 Nov 25.


Diversity of key players in the microbial ecosystems of the human body.

Jordán F, Lauria M, Scotti M, Nguyen TP, Praveen P, Morine M, Priami C.

Sci Rep. 2015 Oct 30;5:15920. doi: 10.1038/srep15920.


Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations.

Rizzetto S, Priami C, Csikász-Nagy A.

PLoS Comput Biol. 2015 Oct 22;11(10):e1004424. doi: 10.1371/journal.pcbi.1004424. eCollection 2015 Oct.


The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome.

Praveen P, Jordan F, Priami C, Morine MJ.

Microbiome. 2015 Sep 24;3:41. doi: 10.1186/s40168-015-0104-7.


Quantitative analysis reveals how EGFR activation and downregulation are coupled in normal but not in cancer cells.

Capuani F, Conte A, Argenzio E, Marchetti L, Priami C, Polo S, Di Fiore PP, Sigismund S, Ciliberto A.

Nat Commun. 2015 Aug 12;6:7999. doi: 10.1038/ncomms8999.


Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm.

Thanh VH, Priami C.

J Chem Phys. 2015 Aug 7;143(5):054104. doi: 10.1063/1.4927916.


Novel drug target identification for the treatment of dementia using multi-relational association mining.

Nguyen TP, Priami C, Caberlotto L.

Sci Rep. 2015 Jul 8;5:11104. doi: 10.1038/srep11104.


On the rejection-based algorithm for simulation and analysis of large-scale reaction networks.

Thanh VH, Zunino R, Priami C.

J Chem Phys. 2015 Jun 28;142(24):244106. doi: 10.1063/1.4922923.


SCUDO: a tool for signature-based clustering of expression profiles.

Lauria M, Moyseos P, Priami C.

Nucleic Acids Res. 2015 Jul 1;43(W1):W188-92. doi: 10.1093/nar/gkv449. Epub 2015 May 9.


Modelling the p53/p66Shc Aging Pathway in the Shortest Living Vertebrate Nothobranchius Furzeri.

Priami C, De Michele G, Cotelli F, Cellerino A, Giorgio M, Pelicci PG, Migliaccio E.

Aging Dis. 2015 Mar 10;6(2):95-108. doi: 10.14336/AD.2014.0228. eCollection 2015 Mar. Review.


Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays.

Thanh VH, Priami C, Zunino R.

J Chem Phys. 2014 Oct 7;141(13):134116. doi: 10.1063/1.4896985.


Genetic associations with micronutrient levels identified in immune and gastrointestinal networks.

Morine MJ, Monteiro JP, Wise C, Teitel C, Pence L, Williams A, Ning B, McCabe-Sellers B, Champagne C, Turner J, Shelby B, Bogle M, Beger RD, Priami C, Kaput J.

Genes Nutr. 2014 Jul;9(4):408. doi: 10.1007/s12263-014-0408-4. Epub 2014 May 31.


Methylation potential associated with diet, genotype, protein, and metabolite levels in the Delta Obesity Vitamin Study.

Monteiro JP, Wise C, Morine MJ, Teitel C, Pence L, Williams A, McCabe-Sellers B, Champagne C, Turner J, Shelby B, Ning B, Oguntimein J, Taylor L, Toennessen T, Priami C, Beger RD, Bogle M, Kaput J.

Genes Nutr. 2014 May;9(3):403. doi: 10.1007/s12263-014-0403-9. Epub 2014 Apr 24.


Network analysis of neurodegenerative disease highlights a role of Toll-like receptor signaling.

Nguyen TP, Caberlotto L, Morine MJ, Priami C.

Biomed Res Int. 2014;2014:686505. doi: 10.1155/2014/686505. Epub 2014 Jan 16.


Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life.

Kaput J, van Ommen B, Kremer B, Priami C, Monteiro JP, Morine M, Pepping F, Diaz Z, Fenech M, He Y, Albers R, Drevon CA, Evelo CT, Hancock RE, Ijsselmuiden C, Lumey LH, Minihane AM, Muller M, Murgia C, Radonjic M, Sobral B, West KP Jr.

Genes Nutr. 2014 Jan;9(1):378. doi: 10.1007/s12263-013-0378-y. Epub 2013 Dec 22.


Algorithmic modeling quantifies the complementary contribution of metabolic inhibitions to gemcitabine efficacy.

Kahramanoğullari O, Fantaccini G, Lecca P, Morpurgo D, Priami C.

PLoS One. 2012;7(12):e50176. doi: 10.1371/journal.pone.0050176. Epub 2012 Dec 11.


Biological network inference for drug discovery.

Lecca P, Priami C.

Drug Discov Today. 2013 Mar;18(5-6):256-64. doi: 10.1016/j.drudis.2012.11.001. Epub 2012 Nov 10. Review.

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