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Results: 1 to 20 of 44

1.

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ; HUPO Test Sample Working Group.

Nat Methods. 2009 Jun;6(6):423-30. doi: 10.1038/nmeth.1333.

PMID:
19448641
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Small molecule protein interaction profiling with functional protein microarrays.

Meng L, Mattoon D, Predki P.

Methods Mol Biol. 2009;572:177-88. doi: 10.1007/978-1-60761-244-5_11.

PMID:
20694692
[PubMed - indexed for MEDLINE]
3.

Identification and quantification of proteins differentially secreted by a pair of normal and malignant breast-cancer cell lines.

Liang X, Huuskonen J, Hajivandi M, Manzanedo R, Predki P, Amshey JR, Pope RM.

Proteomics. 2009 Jan;9(1):182-93. doi: 10.1002/pmic.200700957.

PMID:
19053080
[PubMed - indexed for MEDLINE]
4.

Applications of protein arrays for small molecule drug discovery and characterization.

Michaud GA, Salcius M, Zhou F, Papov VV, Merkel J, Murtha M, Predki P, Schweitzer B.

Biotechnol Genet Eng Rev. 2006;22:197-211. Review. No abstract available.

PMID:
18476332
[PubMed - indexed for MEDLINE]
5.

Identification of small molecule targets on functional protein microarrays.

Salcius M, Michaud GA, Schweitzer B, Predki PF.

Methods Mol Biol. 2007;382:239-48. doi: 10.1007/978-1-59745-304-2_15.

PMID:
18220235
[PubMed - indexed for MEDLINE]
6.

Quantitative comparison of IMAC and TiO2 surfaces used in the study of regulated, dynamic protein phosphorylation.

Liang X, Fonnum G, Hajivandi M, Stene T, Kjus NH, Ragnhildstveit E, Amshey JW, Predki P, Pope RM.

J Am Soc Mass Spectrom. 2007 Nov;18(11):1932-44. Epub 2007 Aug 14.

PMID:
17870612
[PubMed - indexed for MEDLINE]
Free Article
7.

A critical role for cortactin phosphorylation by Abl-family kinases in PDGF-induced dorsal-wave formation.

Boyle SN, Michaud GA, Schweitzer B, Predki PF, Koleske AJ.

Curr Biol. 2007 Mar 6;17(5):445-51. Epub 2007 Feb 15.

PMID:
17306540
[PubMed - indexed for MEDLINE]
Free Article
8.

A pooling-deconvolution strategy for biological network elucidation.

Jin F, Hazbun T, Michaud GA, Salcius M, Predki PF, Fields S, Huang J.

Nat Methods. 2006 Mar;3(3):183-9.

PMID:
16489335
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Protein microarrays: a new tool for profiling antibody cross-reactivity.

Predki PF, Mattoon D, Bangham R, Schweitzer B, Michaud G.

Hum Antibodies. 2005;14(1-2):7-15. Review.

PMID:
16424595
[PubMed - indexed for MEDLINE]
10.

Global analysis of protein phosphorylation in yeast.

Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, Meng L, Stark MJ, Stern DF, De Virgilio C, Tyers M, Andrews B, Gerstein M, Schweitzer B, Predki PF, Snyder M.

Nature. 2005 Dec 1;438(7068):679-84.

PMID:
16319894
[PubMed - indexed for MEDLINE]
11.

An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacterium.

Meeks JC, Elhai J, Thiel T, Potts M, Larimer F, Lamerdin J, Predki P, Atlas R.

Photosynth Res. 2001;70(1):85-106.

PMID:
16228364
[PubMed - as supplied by publisher]
12.

The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1.

Mackenzie C, Choudhary M, Larimer FW, Predki PF, Stilwagen S, Armitage JP, Barber RD, Donohue TJ, Hosler JP, Newman JE, Shapleigh JP, Sockett RE, Zeilstra-Ryalls J, Kaplan S.

Photosynth Res. 2001;70(1):19-41.

PMID:
16228360
[PubMed - as supplied by publisher]
13.

Protein microarray-based screening of antibody specificity.

Bangham R, Michaud GA, Schweitzer B, Predki PF.

Methods Mol Med. 2005;114:173-82.

PMID:
16156103
[PubMed - indexed for MEDLINE]
14.

Functional protein microarrays: just how functional are they?

Merkel JS, Michaud GA, Salcius M, Schweitzer B, Predki PF.

Curr Opin Biotechnol. 2005 Aug;16(4):447-52. Review.

PMID:
16006113
[PubMed - indexed for MEDLINE]
15.

Sequence analysis of the Lactobacillus plantarum bacteriophage PhiJL-1.

Lu Z, Altermann E, Breidt F, Predki P, Fleming HP, Klaenhammer TR.

Gene. 2005 Mar 28;348:45-54.

PMID:
15777728
[PubMed - indexed for MEDLINE]
16.

The sequence and analysis of duplication-rich human chromosome 16.

Martin J, Han C, Gordon LA, Terry A, Prabhakar S, She X, Xie G, Hellsten U, Chan YM, Altherr M, Couronne O, Aerts A, Bajorek E, Black S, Blumer H, Branscomb E, Brown NC, Bruno WJ, Buckingham JM, Callen DF, Campbell CS, Campbell ML, Campbell EW, Caoile C, Challacombe JF, Chasteen LA, Chertkov O, Chi HC, Christensen M, Clark LM, Cohn JD, Denys M, Detter JC, Dickson M, Dimitrijevic-Bussod M, Escobar J, Fawcett JJ, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Goodwin LA, Grady DL, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Hildebrand CE, Huang W, Israni S, Jett J, Jewett PB, Kadner K, Kimball H, Kobayashi A, Krawczyk MC, Leyba T, Longmire JL, Lopez F, Lou Y, Lowry S, Ludeman T, Manohar CF, Mark GA, McMurray KL, Meincke LJ, Morgan J, Moyzis RK, Mundt MO, Munk AC, Nandkeshwar RD, Pitluck S, Pollard M, Predki P, Parson-Quintana B, Ramirez L, Rash S, Retterer J, Ricke DO, Robinson DL, Rodriguez A, Salamov A, Saunders EH, Scott D, Shough T, Stallings RL, Stalvey M, Sutherland RD, Tapia R, Tesmer JG, Thayer N, Thompson LS, Tice H, Torney DC, Tran-Gyamfi M, Tsai M, Ulanovsky LE, Ustaszewska A, Vo N, White PS, Williams AL, Wills PL, Wu JR, Wu K, Yang J, Dejong P, Bruce D, Doggett NA, Deaven L, Schmutz J, Grimwood J, Richardson P, Rokhsar DS, Eichler EE, Gilna P, Lucas SM, Myers RM, Rubin EM, Pennacchio LA.

Nature. 2004 Dec 23;432(7020):988-94.

PMID:
15616553
[PubMed - indexed for MEDLINE]
17.

Development of functional protein microarrays for drug discovery: progress and challenges.

Zhou FX, Bonin J, Predki PF.

Comb Chem High Throughput Screen. 2004 Sep;7(6):539-46. Review.

PMID:
15379625
[PubMed - indexed for MEDLINE]
18.

The DNA sequence and comparative analysis of human chromosome 5.

Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, Altherr M, Bajorek E, Black S, Branscomb E, Caoile C, Challacombe JF, Chan YM, Denys M, Detter JC, Escobar J, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Israni S, Jett J, Kadner K, Kimball H, Kobayashi A, Lopez F, Lou Y, Martinez D, Medina C, Morgan J, Nandkeshwar R, Noonan JP, Pitluck S, Pollard M, Predki P, Priest J, Ramirez L, Retterer J, Rodriguez A, Rogers S, Salamov A, Salazar A, Thayer N, Tice H, Tsai M, Ustaszewska A, Vo N, Wheeler J, Wu K, Yang J, Dickson M, Cheng JF, Eichler EE, Olsen A, Pennacchio LA, Rokhsar DS, Richardson P, Lucas SM, Myers RM, Rubin EM.

Nature. 2004 Sep 16;431(7006):268-74.

PMID:
15372022
[PubMed - indexed for MEDLINE]
19.

Practical applications of rolling circle amplification of DNA templates.

Richardson PM, Detter C, Schweitzer B, Predki PF.

Genet Eng (N Y). 2003;25:51-63.

PMID:
15260233
[PubMed - indexed for MEDLINE]
20.

The DNA sequence and biology of human chromosome 19.

Grimwood J, Gordon LA, Olsen A, Terry A, Schmutz J, Lamerdin J, Hellsten U, Goodstein D, Couronne O, Tran-Gyamfi M, Aerts A, Altherr M, Ashworth L, Bajorek E, Black S, Branscomb E, Caenepeel S, Carrano A, Caoile C, Chan YM, Christensen M, Cleland CA, Copeland A, Dalin E, Dehal P, Denys M, Detter JC, Escobar J, Flowers D, Fotopulos D, Garcia C, Georgescu AM, Glavina T, Gomez M, Gonzales E, Groza M, Hammon N, Hawkins T, Haydu L, Ho I, Huang W, Israni S, Jett J, Kadner K, Kimball H, Kobayashi A, Larionov V, Leem SH, Lopez F, Lou Y, Lowry S, Malfatti S, Martinez D, McCready P, Medina C, Morgan J, Nelson K, Nolan M, Ovcharenko I, Pitluck S, Pollard M, Popkie AP, Predki P, Quan G, Ramirez L, Rash S, Retterer J, Rodriguez A, Rogers S, Salamov A, Salazar A, She X, Smith D, Slezak T, Solovyev V, Thayer N, Tice H, Tsai M, Ustaszewska A, Vo N, Wagner M, Wheeler J, Wu K, Xie G, Yang J, Dubchak I, Furey TS, DeJong P, Dickson M, Gordon D, Eichler EE, Pennacchio LA, Richardson P, Stubbs L, Rokhsar DS, Myers RM, Rubin EM, Lucas SM.

Nature. 2004 Apr 1;428(6982):529-35.

PMID:
15057824
[PubMed - indexed for MEDLINE]

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