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Results: 1 to 20 of 80

1.

Optimized protocol for simple extraction of high quality genomic DNA from Clostridium difficile for whole genome sequencing.

Sim JH, Anikst V, Lohith A, Pourmand N, Banaei N.

J Clin Microbiol. 2015 Apr 15. pii: JCM.00956-15. [Epub ahead of print]

PMID:
25878343
2.

Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing.

Lee MC, Lopez-Diaz FJ, Khan SY, Tariq MA, Dayn Y, Vaske CJ, Radenbaugh AJ, Kim HJ, Emerson BM, Pourmand N.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):E4726-35. doi: 10.1073/pnas.1404656111. Epub 2014 Oct 22.

3.

You cannot tell a book by looking at the cover: Cryptic complexity in bacterial evolution.

Zhang Q, Bos J, Tarnopolskiy G, Sturm JC, Kim H, Pourmand N, Austin RH.

Biomicrofluidics. 2014 Sep 9;8(5):052004. doi: 10.1063/1.4894410. eCollection 2014 Sep.

PMID:
25332728
4.

Confirmation of the cellular targets of benomyl and rapamycin using next-generation sequencing of resistant mutants in S. cerevisiae.

Wride DA, Pourmand N, Bray WM, Kosarchuk JJ, Nisam SC, Quan TK, Berkeley RF, Katzman S, Hartzog GA, Dobkin CE, Scott Lokey R.

Mol Biosyst. 2014 Dec;10(12):3179-87. doi: 10.1039/c4mb00146j.

PMID:
25257345
5.

Compartmental genomics in living cells revealed by single-cell nanobiopsy.

Actis P, Maalouf MM, Kim HJ, Lohith A, Vilozny B, Seger RA, Pourmand N.

ACS Nano. 2014 Jan 28;8(1):546-53. doi: 10.1021/nn405097u. Epub 2013 Dec 4.

6.

The Sequencing Bead Array (SBA), a next-generation digital suspension array.

Akhras MS, Pettersson E, Diamond L, Unemo M, Okamoto J, Davis RW, Pourmand N.

PLoS One. 2013 Oct 7;8(10):e76696. doi: 10.1371/journal.pone.0076696. eCollection 2013.

7.

Direct oligonucleotide synthesis onto super-paramagnetic beads.

Jensen MA, Akhras MS, Fukushima M, Pourmand N, Davis RW.

J Biotechnol. 2013 Sep 20;167(4):448-53. doi: 10.1016/j.jbiotec.2013.08.006. Epub 2013 Aug 11.

8.

Carbohydrate-actuated nanofluidic diode: switchable current rectification in a nanopipette.

Vilozny B, Wollenberg AL, Actis P, Hwang D, Singaram B, Pourmand N.

Nanoscale. 2013 Oct 7;5(19):9214-21. doi: 10.1039/c3nr02105j. Epub 2013 Aug 12.

9.

HLA typing from RNA-seq data using hierarchical read weighting [corrected].

Kim HJ, Pourmand N.

PLoS One. 2013 Jun 28;8(6):e67885. doi: 10.1371/journal.pone.0067885. Print 2013. Erratum in: PLoS One. 2014;9(7):e104664.

10.

Distinctive microRNA expression signatures in proton-irradiated mice.

Khan SY, Tariq MA, Perrott JP, Brumbaugh CD, Kim HJ, Shabbir MI, Ramesh GT, Pourmand N.

Mol Cell Biochem. 2013 Oct;382(1-2):225-35. doi: 10.1007/s11010-013-1738-z. Epub 2013 Jul 2.

PMID:
23817773
11.

Frac-seq reveals isoform-specific recruitment to polyribosomes.

Sterne-Weiler T, Martinez-Nunez RT, Howard JM, Cvitovik I, Katzman S, Tariq MA, Pourmand N, Sanford JR.

Genome Res. 2013 Oct;23(10):1615-23. doi: 10.1101/gr.148585.112. Epub 2013 Jun 19.

12.

Convergent antibody signatures in human dengue.

Parameswaran P, Liu Y, Roskin KM, Jackson KK, Dixit VP, Lee JY, Artiles KL, Zompi S, Vargas MJ, Simen BB, Hanczaruk B, McGowan KR, Tariq MA, Pourmand N, Koller D, Balmaseda A, Boyd SD, Harris E, Fire AZ.

Cell Host Microbe. 2013 Jun 12;13(6):691-700. doi: 10.1016/j.chom.2013.05.008.

13.

Use of whole genome sequencing to determine the microevolution of Mycobacterium tuberculosis during an outbreak.

Kato-Maeda M, Ho C, Passarelli B, Banaei N, Grinsdale J, Flores L, Anderson J, Murray M, Rose G, Kawamura LM, Pourmand N, Tariq MA, Gagneux S, Hopewell PC.

PLoS One. 2013;8(3):e58235. doi: 10.1371/journal.pone.0058235. Epub 2013 Mar 5.

14.

Identification of radiation-induced microRNA transcriptome by next-generation massively parallel sequencing.

Chaudhry MA, Omaruddin RA, Brumbaugh CD, Tariq MA, Pourmand N.

J Radiat Res. 2013 Sep;54(5):808-22. doi: 10.1093/jrr/rrt014. Epub 2013 Feb 26.

15.

Copper Sensing with a Prion Protein Modified Nanopipette.

Actis P, McDonald A, Beeler D, Vilozny B, Millhauser G, Pourmand N.

RSC Adv. 2012 Jan 1;2(31):11638-11640. Epub 2012 Sep 26.

16.

Voltage controlled nano-injection system for single-cell surgery.

Adam Seger R, Actis P, Penfold C, Maalouf M, Vilozny B, Pourmand N.

Nanoscale. 2012 Sep 28;4(19):5843-6. doi: 10.1039/c2nr31700a. Epub 2012 Aug 16.

17.

Evaluation of ProExC as a prognostic marker in oropharyngeal squamous cell carcinomas.

Mills AM, Beck AH, Pourmand N, Le QT, Kong CS.

Am J Surg Pathol. 2012 Aug;36(8):1158-64. doi: 10.1097/PAS.0b013e3182600eaa.

18.

Molecular probe technology detects bacteria without culture.

Hyman RW, St Onge RP, Kim H, Tamaresis JS, Miranda M, Aparicio AM, Fukushima M, Pourmand N, Giudice LC, Davis RW.

BMC Microbiol. 2012 Mar 9;12:29. doi: 10.1186/1471-2180-12-29.

19.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

20.

NanoStriDE: normalization and differential expression analysis of NanoString nCounter data.

Brumbaugh CD, Kim HJ, Giovacchini M, Pourmand N.

BMC Bioinformatics. 2011 Dec 16;12:479. doi: 10.1186/1471-2105-12-479.

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