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Items: 1 to 20 of 195

1.

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J.

BMC Genomics. 2016 May 18;17(1):368. doi: 10.1186/s12864-016-2709-z.

2.

Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish.

Desvignes T, Detrich HW 3rd, Postlethwait JH.

Mar Genomics. 2016 May 14. pii: S1874-7787(16)30037-X. doi: 10.1016/j.margen.2016.04.013. [Epub ahead of print]

PMID:
27189439
3.

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alföldi J, Lindblad-Toh K, Postlethwait JH.

Nat Genet. 2016 Apr;48(4):427-37. doi: 10.1038/ng.3526. Epub 2016 Mar 7.

PMID:
26950095
4.

A Genetic Map for the Only Self-Fertilizing Vertebrate.

Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.

G3 (Bethesda). 2016 Apr 7;6(4):1095-106. doi: 10.1534/g3.115.022699.

5.

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev SA, Agarwala R, Volff JN, Postlethwait JH, Schartl M, Minx P, Warren WC, Walter RB.

BMC Genomics. 2016 Jan 7;17:37. doi: 10.1186/s12864-015-2361-z.

6.

Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation.

Tallafuss A, Kelly M, Gay L, Gibson D, Batzel P, Karfilis KV, Eisen J, Stankunas K, Postlethwait JH, Washbourne P.

BMC Genomics. 2015 Dec 23;16:1100. doi: 10.1186/s12864-015-2215-8.

7.

miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Desvignes T, Batzel P, Berezikov E, Eilbeck K, Eppig JT, McAndrews MS, Singer A, Postlethwait JH.

Trends Genet. 2015 Nov;31(11):613-26. doi: 10.1016/j.tig.2015.09.002. Epub 2015 Oct 8. Review.

PMID:
26453491
8.

"Wrecks of Ancient Life": Genetic Variants Vetted by Natural Selection.

Postlethwait JH.

Genetics. 2015 Jul;200(3):675-8. doi: 10.1534/genetics.115.178442.

9.

Two Zebrafish hsd3b Genes Are Distinct in Function, Expression, and Evolution.

Lin JC, Hu S, Ho PH, Hsu HJ, Postlethwait JH, Chung BC.

Endocrinology. 2015 Aug;156(8):2854-62. doi: 10.1210/en.2014-1584. Epub 2015 May 14.

PMID:
25974401
10.

Developmental timing of sodium perchlorate exposure alters angiogenesis, thyroid follicle proliferation and sexual maturation in stickleback.

Furin CG, von Hippel FA, Postlethwait JH, Buck CL, Cresko WA, O'Hara TM.

Gen Comp Endocrinol. 2015 Aug 1;219:24-35. doi: 10.1016/j.ygcen.2015.04.002. Epub 2015 Apr 9.

PMID:
25865142
11.

Perchlorate exposure does not modulate temporal variation of whole-body thyroid and androgen hormone content in threespine stickleback.

Gardell AM, Dillon DM, Smayda LC, von Hippel FA, Cresko WA, Postlethwait JH, Buck CL.

Gen Comp Endocrinol. 2015 Aug 1;219:45-52. doi: 10.1016/j.ygcen.2015.02.014. Epub 2015 Feb 27.

PMID:
25733204
12.

Circadian modulation of dopamine levels and dopaminergic neuron development contributes to attention deficiency and hyperactive behavior.

Huang J, Zhong Z, Wang M, Chen X, Tan Y, Zhang S, He W, He X, Huang G, Lu H, Wu P, Che Y, Yan YL, Postlethwait JH, Chen W, Wang H.

J Neurosci. 2015 Feb 11;35(6):2572-87. doi: 10.1523/JNEUROSCI.2551-14.2015.

13.

Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes.

Liu C, Hu J, Qu C, Wang L, Huang G, Niu P, Zhong Z, Hong F, Wang G, Postlethwait JH, Wang H.

Sci Rep. 2015 Jan 29;5:8113. doi: 10.1038/srep08113.

14.

Deep conservation of wrist and digit enhancers in fish.

Gehrke AR, Schneider I, de la Calle-Mustienes E, Tena JJ, Gomez-Marin C, Chandran M, Nakamura T, Braasch I, Postlethwait JH, Gómez-Skarmeta JL, Shubin NH.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):803-8. doi: 10.1073/pnas.1420208112. Epub 2014 Dec 22.

15.

Perchlorate disrupts embryonic androgen synthesis and reproductive development in threespine stickleback without changing whole-body levels of thyroid hormone.

Petersen AM, Dillon D, Bernhardt RR, Torunsky R, Postlethwait JH, von Hippel FA, Loren Buck C, Cresko WA.

Gen Comp Endocrinol. 2015 Jan 1;210:130-44. doi: 10.1016/j.ygcen.2014.10.015. Epub 2014 Nov 10.

16.

Phylogeny of zebrafish, a "model species," within Danio, a "model genus".

McCluskey BM, Postlethwait JH.

Mol Biol Evol. 2015 Mar;32(3):635-52. doi: 10.1093/molbev/msu325. Epub 2014 Nov 20.

17.

The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment.

Shin SC, Ahn do H, Kim SJ, Pyo CW, Lee H, Kim MK, Lee J, Lee JE, Detrich HW, Postlethwait JH, Edwards D, Lee SG, Lee JH, Park H.

Genome Biol. 2014 Sep 25;15(9):468. doi: 10.1186/s13059-014-0468-1.

18.

Wild sex in zebrafish: loss of the natural sex determinant in domesticated strains.

Wilson CA, High SK, McCluskey BM, Amores A, Yan YL, Titus TA, Anderson JL, Batzel P, Carvan MJ 3rd, Schartl M, Postlethwait JH.

Genetics. 2014 Nov;198(3):1291-308. doi: 10.1534/genetics.114.169284. Epub 2014 Sep 18.

19.

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

Braasch I, Peterson SM, Desvignes T, McCluskey BM, Batzel P, Postlethwait JH.

J Exp Zool B Mol Dev Evol. 2015 Jun;324(4):316-41. doi: 10.1002/jez.b.22589. Epub 2014 Aug 11. Review.

PMID:
25111899
20.

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing.

Desvignes T, Beam MJ, Batzel P, Sydes J, Postlethwait JH.

Gene. 2014 Aug 10;546(2):386-9. doi: 10.1016/j.gene.2014.05.036. Epub 2014 May 15.

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