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Results: 1 to 20 of 176

1.

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing.

Desvignes T, Beam MJ, Batzel P, Sydes J, Postlethwait JH.

Gene. 2014 Aug 10;546(2):386-9. doi: 10.1016/j.gene.2014.05.036. Epub 2014 May 15.

PMID:
24835514
[PubMed - in process]
2.

A RAD-Tag Genetic Map for the Platyfish (Xiphophorus maculatus) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish.

Amores A, Catchen J, Nanda I, Warren W, Walter R, Schartl M, Postlethwait JH.

Genetics. 2014 Apr 2;197(2):625-641. [Epub ahead of print]

PMID:
24700104
[PubMed - as supplied by publisher]
Free Article
3.

Evolution of the miR199-214 cluster and vertebrate skeletal development.

Desvignes T, Contreras A, Postlethwait JH.

RNA Biol. 2014 Apr;11(4):281-94. doi: 10.4161/rna.28141. Epub 2014 Feb 20.

PMID:
24643020
[PubMed - in process]
Free Article
4.

Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.

Braasch I, Guiguen Y, Loker R, Letaw JH, Ferrara A, Bobe J, Postlethwait JH.

Comp Biochem Physiol C Toxicol Pharmacol. 2014 Jun;163:24-36. doi: 10.1016/j.cbpc.2014.01.005. Epub 2014 Jan 30.

PMID:
24486528
[PubMed - in process]
5.

Differentially-expressed opsin genes identified in Sinocyclocheilus cavefish endemic to China.

Meng F, Zhao Y, Postlethwait JH, Zhang C.

Curr Zool. 2013 Apr 1;59(2):170-174.

PMID:
24363664
[PubMed]
Free PMC Article
6.

EML1 (CNG-modulin) controls light sensitivity in darkness and under continuous illumination in zebrafish retinal cone photoreceptors.

Korenbrot JI, Mehta M, Tserentsoodol N, Postlethwait JH, Rebrik TI.

J Neurosci. 2013 Nov 6;33(45):17763-76. doi: 10.1523/JNEUROSCI.2659-13.2013.

PMID:
24198367
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Retinoic acid metabolic genes, meiosis, and gonadal sex differentiation in zebrafish.

Rodríguez-Marí A, Cañestro C, BreMiller RA, Catchen JM, Yan YL, Postlethwait JH.

PLoS One. 2013 Sep 10;8(9):e73951. doi: 10.1371/journal.pone.0073951. eCollection 2013.

PMID:
24040125
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery.

Zhang G, Hoersch S, Amsterdam A, Whittaker CA, Beert E, Catchen JM, Farrington S, Postlethwait JH, Legius E, Hopkins N, Lees JA.

PLoS Genet. 2013 Aug;9(8):e1003734. doi: 10.1371/journal.pgen.1003734. Epub 2013 Aug 29.

PMID:
24009526
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish.

Meng F, Braasch I, Phillips JB, Lin X, Titus T, Zhang C, Postlethwait JH.

Mol Biol Evol. 2013 Jul;30(7):1527-43. doi: 10.1093/molbev/mst079. Epub 2013 Apr 23. Erratum in: Mol Biol Evol. 2013 Oct;30(10):2367.

PMID:
23612715
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

PMID:
23598338
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The zebrafish reference genome sequence and its relationship to the human genome.

Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohammadi M, Barr L, Martin S, Wray P, Ellington A, Matthews N, Ellwood M, Woodmansey R, Clark G, Cooper J, Tromans A, Grafham D, Skuce C, Pandian R, Andrews R, Harrison E, Kimberley A, Garnett J, Fosker N, Hall R, Garner P, Kelly D, Bird C, Palmer S, Gehring I, Berger A, Dooley CM, Ersan-Ürün Z, Eser C, Geiger H, Geisler M, Karotki L, Kirn A, Konantz J, Konantz M, Oberländer M, Rudolph-Geiger S, Teucke M, Lanz C, Raddatz G, Osoegawa K, Zhu B, Rapp A, Widaa S, Langford C, Yang F, Schuster SC, Carter NP, Harrow J, Ning Z, Herrero J, Searle SM, Enright A, Geisler R, Plasterk RH, Lee C, Westerfield M, de Jong PJ, Zon LI, Postlethwait JH, Nüsslein-Volhard C, Hubbard TJ, Roest Crollius H, Rogers J, Stemple DL.

Nature. 2013 Apr 25;496(7446):498-503. doi: 10.1038/nature12111. Epub 2013 Apr 17. Erratum in: Nature. 2014 Jan 9;505(7482):248. Cooper, James [corrected to Cooper, James D]; Eliott, David [corrected to Elliot, David]; Mortimer, Beverly [corrected to Mortimore, Beverley]; Begum, Sharmin [added]; Lloyd, Christine [added]; Lanz, Christa [added]; Raddatz, Günter [added]; Schuster, Stephan C [added].

PMID:
23594743
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.

Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff JN, Lesch KP, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, Boore J, Searle S, Postlethwait JH, Warren WC.

Nat Genet. 2013 May;45(5):567-72. doi: 10.1038/ng.2604. Epub 2013 Mar 31.

PMID:
23542700
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dynamic Evolution of the LPS-Detoxifying Enzyme Intestinal Alkaline Phosphatase in Zebrafish and Other Vertebrates.

Yang Y, Wandler AM, Postlethwait JH, Guillemin K.

Front Immunol. 2012 Oct 12;3:314. doi: 10.3389/fimmu.2012.00314. eCollection 2012.

PMID:
23091474
[PubMed]
Free PMC Article
14.

Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics.

Anderson JL, Rodríguez Marí A, Braasch I, Amores A, Hohenlohe P, Batzel P, Postlethwait JH.

PLoS One. 2012;7(7):e40701. doi: 10.1371/journal.pone.0040701. Epub 2012 Jul 9.

PMID:
22792396
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

fras1 shapes endodermal pouch 1 and stabilizes zebrafish pharyngeal skeletal development.

Talbot JC, Walker MB, Carney TJ, Huycke TR, Yan YL, BreMiller RA, Gai L, Delaurier A, Postlethwait JH, Hammerschmidt M, Kimmel CB.

Development. 2012 Aug;139(15):2804-13. doi: 10.1242/dev.074906.

PMID:
22782724
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis.

Yan YL, Bhattacharya P, He XJ, Ponugoti B, Marquardt B, Layman J, Grunloh M, Postlethwait JH, Rubin DA.

J Endocrinol. 2012 Sep;214(3):421-35. doi: 10.1530/JOE-12-0110. Epub 2012 Jul 3.

PMID:
22761277
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Histone deacetylase-4 is required during early cranial neural crest development for generation of the zebrafish palatal skeleton.

DeLaurier A, Nakamura Y, Braasch I, Khanna V, Kato H, Wakitani S, Postlethwait JH, Kimmel CB.

BMC Dev Biol. 2012 Jun 7;12:16. doi: 10.1186/1471-213X-12-16.

PMID:
22676467
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evolution of the osteoblast: skeletogenesis in gar and zebrafish.

Eames BF, Amores A, Yan YL, Postlethwait JH.

BMC Evol Biol. 2012 Mar 5;12:27. doi: 10.1186/1471-2148-12-27.

PMID:
22390748
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Stacks: building and genotyping Loci de novo from short-read sequences.

Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH.

G3 (Bethesda). 2011 Aug;1(3):171-82. doi: 10.1534/g3.111.000240. Epub 2011 Aug 1.

PMID:
22384329
[PubMed]
Free PMC Article
20.

Sox9 is upstream of microRNA-140 in cartilage.

Nakamura Y, He X, Kato H, Wakitani S, Kobayashi T, Watanabe S, Iida A, Tahara H, Warman ML, Watanapokasin R, Postlethwait JH.

Appl Biochem Biotechnol. 2012 Jan;166(1):64-71. doi: 10.1007/s12010-011-9404-y. Epub 2011 Nov 4.

PMID:
22052544
[PubMed - indexed for MEDLINE]
Free PMC Article

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