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Results: 1 to 20 of 45

1.

The Case for an Early Biological Origin of DNA.

Poole AM, Horinouchi N, Catchpole RJ, Si D, Hibi M, Tanaka K, Ogawa J.

J Mol Evol. 2014 Nov 26. [Epub ahead of print]

PMID:
25425102
[PubMed - as supplied by publisher]
2.

Antibiotic genes spread far and wide.

Catchpole RJ, Poole AM.

Elife. 2014 Nov 25;3. doi: 10.7554/eLife.05244.

PMID:
25422937
[PubMed - in process]
Free Article
3.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

Lindgreen S, Umu SU, Lai AS, Eldai H, Liu W, McGimpsey S, Wheeler NE, Biggs PJ, Thomson NR, Barquist L, Poole AM, Gardner PP.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003907. doi: 10.1371/journal.pcbi.1003907. eCollection 2014 Oct.

PMID:
25357249
[PubMed - in process]
Free PMC Article
4.

Eukaryotic Origins: How and When Was the Mitochondrion Acquired?

Poole AM, Gribaldo S.

Cold Spring Harb Perspect Biol. 2014 Jul 18. pii: a015990. doi: 10.1101/cshperspect.a015990. [Epub ahead of print]

PMID:
25038049
[PubMed - as supplied by publisher]
5.

Human-assisted spread of a maladaptive behavior in a critically endangered bird.

Massaro M, Sainudiin R, Merton D, Briskie JV, Poole AM, Hale ML.

PLoS One. 2013 Dec 9;8(12):e79066. doi: 10.1371/journal.pone.0079066. eCollection 2013.

PMID:
24348992
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Bacterial natural transformation by highly fragmented and damaged DNA.

Overballe-Petersen S, Harms K, Orlando LA, Mayar JV, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19860-5. doi: 10.1073/pnas.1315278110. Epub 2013 Nov 18.

PMID:
24248361
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities.

Thureborn P, Lundin D, Plathan J, Poole AM, Sjöberg BM, Sjöling S.

PLoS One. 2013 Sep 23;8(9):e74983. doi: 10.1371/journal.pone.0074983. eCollection 2013.

PMID:
24086414
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolutionary history of the TBP-domain superfamily.

Brindefalk B, Dessailly BH, Yeats C, Orengo C, Werner F, Poole AM.

Nucleic Acids Res. 2013 Mar 1;41(5):2832-45. doi: 10.1093/nar/gkt045. Epub 2013 Feb 1.

PMID:
23376926
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
[PubMed - indexed for MEDLINE]
10.

Comparative analysis of RNA families reveals distinct repertoires for each domain of life.

Hoeppner MP, Gardner PP, Poole AM.

PLoS Comput Biol. 2012;8(11):e1002752. doi: 10.1371/journal.pcbi.1002752. Epub 2012 Nov 1.

PMID:
23133357
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility.

Hoeppner MP, Poole AM.

BMC Evol Biol. 2012 Sep 15;12:183. doi: 10.1186/1471-2148-12-183.

PMID:
22978381
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A positive role for yeast extrachromosomal rDNA circles? Extrachromosomal ribosomal DNA circle accumulation during the retrograde response may suppress mitochondrial cheats in yeast through the action of TAR1.

Poole AM, Kobayashi T, Ganley AR.

Bioessays. 2012 Sep;34(9):725-9. doi: 10.1002/bies.201200037. Epub 2012 Jun 18. No abstract available.

PMID:
22706794
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

'Ecosystomics': ecology by sequencer.

Poole AM, Stouffer DB, Tylianakis JM.

Trends Ecol Evol. 2012 Jun;27(6):309-10. doi: 10.1016/j.tree.2012.03.008. Epub 2012 Apr 24. No abstract available.

PMID:
22537669
[PubMed - indexed for MEDLINE]
14.

Use of structural phylogenetic networks for classification of the ferritin-like superfamily.

Lundin D, Poole AM, Sjöberg BM, Högbom M.

J Biol Chem. 2012 Jun 8;287(24):20565-75. doi: 10.1074/jbc.M112.367458. Epub 2012 Apr 25.

PMID:
22535960
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains.

Lundin D, Gribaldo S, Torrents E, Sjöberg BM, Poole AM.

BMC Evol Biol. 2010 Dec 10;10:383. doi: 10.1186/1471-2148-10-383.

PMID:
21143941
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Reconciling an archaeal origin of eukaryotes with engulfment: a biologically plausible update of the Eocyte hypothesis.

Poole AM, Neumann N.

Res Microbiol. 2011 Jan;162(1):71-6. doi: 10.1016/j.resmic.2010.10.002. Epub 2010 Oct 27.

PMID:
21034814
[PubMed - indexed for MEDLINE]
17.

Comparative genomic evidence for a complete nuclear pore complex in the last eukaryotic common ancestor.

Neumann N, Lundin D, Poole AM.

PLoS One. 2010 Oct 8;5(10):e13241. doi: 10.1371/journal.pone.0013241.

PMID:
20949036
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

Gribaldo S, Poole AM, Daubin V, Forterre P, Brochier-Armanet C.

Nat Rev Microbiol. 2010 Oct;8(10):743-52. doi: 10.1038/nrmicro2426.

PMID:
20844558
[PubMed - indexed for MEDLINE]
19.

SnoPatrol: how many snoRNA genes are there?

Gardner PP, Bateman A, Poole AM.

J Biol. 2010;9(1):4. doi: 10.1186/jbiol211. Epub 2010 Jan 25.

PMID:
20122292
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank.

Lundin D, Torrents E, Poole AM, Sjöberg BM.

BMC Genomics. 2009 Dec 8;10:589. doi: 10.1186/1471-2164-10-589.

PMID:
19995434
[PubMed - indexed for MEDLINE]
Free PMC Article
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